These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1670 fasta sequence [ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAGCAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATGACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTACTGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGCGTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTGTGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTCGTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGTTCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATTCCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGATGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTCTGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAGCCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTTCTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGAGACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGACAAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAGGAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCAGCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTTATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA] [+] EMBL CNS08J7I [ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAGCAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATGACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTACTGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGCGTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTGTGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACA ] [-] EMBL CNS08J7J [ GTGCTGCTAAAGCTGGGCGCCAACAGGCTGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACATGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTCGTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGTTCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATTCCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGATGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTCTGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAGCCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTTCTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGAGACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGACAAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAGGAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCAGCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTTATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA] consensusID : consensus_5552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAGAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATGACCAAGGACAGGAAAACATCTTCCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATACTGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAG] [+] EMBL BM581583 [CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAGAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTGTTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATGACCAAGGACAGGAAAACATCTTCCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATACTGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCATTTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGAACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTGCCCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGTGTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCGTGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGGAACATCTGCGCTTAATGGCACGTCATATAG] consensusID : consensus_5552#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence [NCAGCAGGAATCGCCACGAGGNTTATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCACGATGGAACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTGCACCGCTGTCCAAGAACT] [+] EMBL BX466165 [NCAGCAGGAATCGCCACGAGGNTTATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCACGATGGAACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGGGAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTGCACCGCTGTCCAAGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5552#0 -----ATAACACCGGACATTGCTATCATTACAGGAAAGCAGCACATAAAAATAGTAAAAG 55 consensus_5552#1 CCGCGGACGCGTGGGCGGACGCGTGGGTTGCAGGAAAGCAGCACATAAAAATAGTAAAAG 60 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 CAACACGAAGACCACCGCTTATCTCGACATCCAATTCGACC--ATTTTGCACGGCAATTG 113 consensus_5552#1 -AACACGAAGACCACCGCTTATCTCGACATCCAATTCGACCCGATTTTGCACGGCAATTG 119 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TTCTAGTTGTTTCACAGCGAGCGGGTCTTTGTTTTGTTGTTTTAAACCGGCCAAATCATG 173 consensus_5552#1 TTCTAGTTGTTTCACAGCGGGCGGGTGTTTGTTTTGTTGTTTTAAACCAGCCAAATCATG 179 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 ACCAAGGATAGGAAAACATCTTTCCTCACCGAAGAGCTGCCACGAAAAATTCTTCACTAC 233 consensus_5552#1 ACCAAGGACAGGAAAACATCTT-CCTCACTGAGGAGCTGCCGCGAAAAATTCTTCAATAC 238 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGCCCAGAACTTGATGGCGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCAT 293 consensus_5552#1 TGCCCAGAACTTGATGGTGAGGGTAAGATTTCCGATGTTCAACTATCAACGCCAGATCAT 298 consensus_5552#2 ---------------------------------------------NCAGCAG-GAATCGC 14 ** * *** consensus_5552#0 TTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTACGTACGAAAGCAACGATGGA 353 consensus_5552#1 TTGGATGGTTTTATGTCGACGATTCACAAGCTTTCGTTTAGGTACGAAAGCAACGATGGA 358 consensus_5552#2 CACGAGGNTT----ATCGACGAGTCACAAGCTTCGCCGTAGGTACGAAAGCA-CGATGGA 69 ** * ** ******* ********** ** *********** ******* consensus_5552#0 ACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 413 consensus_5552#1 ACTGTCGTGCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 418 consensus_5552#2 ACTGTCGTTCAAACGTTGAAACTAATGGTGAAGGTGATGAAGGGTAGCGACGAGTTCCGG 129 ******** *************************************************** consensus_5552#0 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTG 473 consensus_5552#1 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTACACGAAGGTGCTG 478 consensus_5552#2 GAATCGTCCATGGGCAAAACACAATTCACCAATGAAATCTACATCTATACGAAGGTGCTG 189 *********************************************** ************ consensus_5552#0 C-CCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGT 532 consensus_5552#1 C-CCGTGTTCCAAGAACTCCTAACCGAAACCGGCCTAGCGGGAGACTGGTGTCCGAGGGT 537 consensus_5552#2 CACCGCTGTCCAAGAACT------------------------------------------ 207 * *** ********** consensus_5552#0 GTACTACGG-TGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCG 591 consensus_5552#1 GTACTACGGGTGAGGCGGGTCACTTTCCAACCTACAGCGACCAGTACGAAACCATCCTCG 597 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGCTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGG 651 consensus_5552#1 TGTTGGAGGATATCTCTCCGCTGGGCTACAAAGCGGGACCCCGGCTGGATCTGGAGGAGG 657 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 AACATCTGCGCTTAATGGCACGTCATATAGCATCGTTTCACGCGTGCACCTACGCCATGC 711 consensus_5552#1 AACATCTGCGCTTAATGGCACGTCATATAG------------------------------ 687 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 GTCTCCGCAACGATGCCCGATTAGCCTCCCTAATCGAAGGCATTGCTCCGCTGGACTTTG 771 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGGCAGGAGATAAAACGTTCACCAGCTACGATGTGCTGCTAAAGCTGGGCGCCAACAGGC 831 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGTACAAGTATCTGGACGATCATCCCGAGCAGCTGGATAGTGAAGCGTTCAAGCGGGACA 891 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGAACAATCTACGCCAGCGGTACGGTACAACGCCGATCAGTCTGATGCAGGATTTACTTC 951 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 GTAAGGATGAGACATTCTCGGTCATACTGCACGGTGACTACAACCGCAACAATGTGCTGT 1011 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TCCGTACGGATGGCGCTGGCAAGCCGGTCGAGCTAAAGATGTTCGACTTTCAGGAAAATT 1071 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 CCTACGCAACGCCCGTTATCGATCTGACGTTTTATATGTACATGAGCATGACGGAGGAGA 1131 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGCGCAACCGGTACTGGGATGCGGTCGTACTGGAATATCATACCGCACTGTTGGAAAGTC 1191 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 TGGCCGCAATTTTAAAAGTACCACAAGAGGATGGTCTGCTGGATCCGTATCGCGCTCGAG 1251 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 CCTTTTTTGGAACATTTCAAGCGTCATGCCATGTACGGGGTGATTGTGACGTTACACTTT 1311 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 CTACCCTGGATGATGTGCCCGGAGGAGGAGTGCGAACAGTTGGCGCACCATTTCGCGCGA 1371 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 GACGTACACTCGAAAGAGCTGGCCCACTGGACGCTGGTGTGCGGTGGAGAGGAGGTAGAC 1431 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 AAAAGGCTGGTGGGAGTGTTGCGACATGCCAGCAGCAAGGGATATTTTGAGATCGTGAAG 1491 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 GAGTAGATCACGGTTTTAGAATGATTTACTTTTTTATATTTTGTTTAATCAATTTATGCA 1551 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 GCAAAGTCAGCTAAAATGATTAATTTTTTGTTAATTTTTTTATCACGTCAAAGTGCATTT 1611 consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 ATTTCAAAACAGTCAATAAATCTAGTAATCATACCATTACATAGGGTAAAAAAAAAAAA 1670 consensus_5552#1 ----------------------------------------------------------- consensus_5552#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||