These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1487 fasta sequence [CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCGTACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACCCGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCGCTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACGACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGGAATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCCAGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACATGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATCAAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTACCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCATCATGCGCATCTTCCCCATCAGCAGCAACCGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAGTGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTTTTGCGTTTAAGTACGCAGCGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGATGTAAAAGAAAGCAACGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC] [+] EMBL BM634510 [CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCGTACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACCCGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCGCTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACGACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGGAATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCCAGG ] [+] EMBL BM657408 [ ccgCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCGATGAACGGCTCATTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGT GGT GGTGGT GGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATAGTGGTGAACCGTGGCCAGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACATGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATCAAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTACCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCAT ] [+] EMBL BX609416 [ tttACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCGGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCACCATGCGCATCTTCCCCATCAGCAGCAACCGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAGTGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTTTTGCGTTTAAGTACGCAGCGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGATGTAAAAGAAAGCAACGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC] consensusID : consensus_5553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAGTACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAGCAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCAGCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGAAAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGATTATATGTATATGATTCTA] [+] EMBL BM581684 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAGTACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAGCAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCAGCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGAAAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGATTATATGTATATGATTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5553#0 CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCG 60 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 TACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACC 120 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCG 180 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACG 240 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 ACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGG 300 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 AATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCAT 360 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCAC 420 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAAC 480 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 GTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGG 540 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 GTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGC 600 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 AACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCC 660 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 AGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACA 720 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 TGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATC 780 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 AAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTA 840 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTAT 900 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGT 960 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CGATGCCTCCTCCGCCATCGTCCCATCATCATCATGCGCATCTTCCCCATCAGCAGCAAC 1020 consensus_5553#1 ------------------------------------------------------------ consensus_5553#0 CGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAG 1080 consensus_5553#1 ---------------------------------------------------CCGCCCACG 9 ** * * * consensus_5553#0 TGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTG 1140 consensus_5553#1 CGTCC-GCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTG 68 ** * *** ***************************************** consensus_5553#0 CGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCG 1200 consensus_5553#1 CGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCG 128 ************************************************************ consensus_5553#0 TTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATC 1260 consensus_5553#1 TTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATC 188 ************************************************************ consensus_5553#0 GACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTT-TTGCGTTTAAG 1319 consensus_5553#1 GACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAG 248 *********************************************** *********** consensus_5553#0 TACGCAGCGTCTGTCTGT----GTGTGAGTGTGTATGTGTGTGT--AAGCCACCGAAACA 1373 consensus_5553#1 TACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACA 308 ****************** ********************** ************** consensus_5553#0 AATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGA---TGTAAAAGAAAGCAA 1430 consensus_5553#1 AATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAG 368 *************************** ************** ************** consensus_5553#0 CGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC--- 1487 consensus_5553#1 CAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCA 428 * ******************************************************* consensus_5553#0 ------------------------------------------------------------ consensus_5553#1 GCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGA 488 consensus_5553#0 ------------------------------------------------------------ consensus_5553#1 AAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGA 548 consensus_5553#0 ------------------- consensus_5553#1 TTATATGTATATGATTCTA 567 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||