These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 921 fasta sequence [GCAGAATCGCNCACGAGGGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCTGGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCGCATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAAGAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCATCGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGGTGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAGCCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGATTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGANNCTCANACACG] [+] EMBL BX467699 [GCAGAATCGCNCACGAGGGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCTGGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCGCATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAAGAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCATCGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGGTGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAGCCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGATTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGANNCTCANACACG] consensusID : consensus_5558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGCGTGTGAGTGATTGTTCTTTCATTTGTGTTTGTGTGTATCAGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGATGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGA] [+] EMBL BM637076 [CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGCGTGTGAGTGATTGTTCTTTCATTTGTGTTTGTGTGTATCAGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGA ] [+] EMBL BM589701 [ CCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGATGATGATGCGTCGGTGCAGTGCGCTGGGTTTGTGCTGGTGTACGA] consensusID : consensus_5558#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA] [+] EMBL BM582026 [CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTGTACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCTGGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCAATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCTGCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCTGTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCGCTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCGCGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACGTGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGGGCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5558#1 CCGGATCGGTCGACCGGTGCGGTTGGGACTCTCCCGGTGAACAGTGTGTTTGTGCGTTTG 60 consensus_5558#2 ---------------------------CCGCTCCCGGTGAACAGTGTGTTTGTGCGTTTG 33 consensus_5558#0 ------------------------------------------------------------ consensus_5558#1 TGTGTGCGTGTGAG------------TGATTGTTCTTTCATTTGTGTTTGTGTGTATCAG 108 consensus_5558#2 TGTGTGTGTGTGTGTGTGTGTGTGACTGATTGTTCTTTCATTTGTGTTTGGGGGTATCTG 93 consensus_5558#0 ------------------------------------------------------------ consensus_5558#1 TACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGATGCTTCCGGCCCCGAACCT 168 consensus_5558#2 TACTAGTAACATCCCAGTCATGCCCAGTGACGAGCTAGTGGTGCTTCCGGCCCCGAACCT 153 consensus_5558#0 ------------------------------------------------------------ consensus_5558#1 GGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCA 228 consensus_5558#2 GGACAAAGCGCCCGCCCGCTACGATAACGAGATCGACGAGCTGGACGCACACTGTCAGCA 213 consensus_5558#0 ------------------------------------------------GCAGAATCGCNC 12 ** ** consensus_5558#1 ATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 288 consensus_5558#2 ATTAGCGCGGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 273 consensus_5558#0 ACGAGG--GGGACTTTCTGCGCGAAAATGCGACGATTCGTGACCAGAGCCTGACCCAGCT 70 * ** **************************************************** consensus_5558#1 GCGTGACTGGATCGCGAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 348 consensus_5558#2 GCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 333 consensus_5558#0 GCGTGACTGGATCGCCAAGCATCCGAACATCAAGCGCTGCCGCACGGACGCACGCTTTCT 130 *************** ******************************************** consensus_5558#1 GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 408 consensus_5558#2 GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 393 consensus_5558#0 GTTGCGCTTCCTGCGCACGAAGAAGTACTCGTTCATCAATGCGTCGCACATGCTGGAGCG 190 ************************************************************ consensus_5558#1 CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGATATTGAGGATCG 468 consensus_5558#2 CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCG 453 consensus_5558#0 CTATCTGGCCTGCCGGGTGGTGCATCCGCACTGGTTCAAGCGGCTAGACATTGAGGATCG 250 ************************************************ *********** consensus_5558#1 CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 528 consensus_5558#2 CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 513 consensus_5558#0 CGAGATGTGTGGGCTGGTGGAGGCGGGCTTTCTCTATCCGCTGCTGGAGAAGGATGCACG 310 ************************************************************ consensus_5558#1 TGGTCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 588 consensus_5558#2 TGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 573 consensus_5558#0 TGGCCGGACGGTGATTTTCGGCGATGCTGGTACGCTCGATCCGAAGGTGTACACGGTTGG 370 *** ******************************************************** consensus_5558#1 GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTG-ATGATGATGCGTCGGTGCA 647 consensus_5558#2 GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA 633 consensus_5558#0 GCATGGCAGCCGGATGCATATGCTGGTGGGCGAAACGCTGTACGATGATGCGTCGGTGCA 430 **************************************** * ***************** consensus_5558#1 GTGCGCTGGGTTTGTGCTGGTGTACGA--------------------------------- 674 consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 GTGCGCTGGGTTTGTGCTGGTGTACGATCTGTCCGGCATTACGATGGGCATGTTGGGGCT 490 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 GGTGACGCTGAACGATATACGCGATCTGGCGACGTACCTGAACAATGCGGTGCCGATGCG 550 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 CATCCAGGAGGCTACACTTTGTCAACACGGCCGGAGCTTTGGCGGCTGGAAGATCGCGAA 610 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 GAGCTACAACGCCTGGGGCTGGATGAACGAGGAANGCTTCGCAATCGTATCATGTGTCAT 670 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 CGCAGCCTGGAAGATCTGCGACAAAGAAGGTGACAAGCGGGTCATACCCCAGGAGTACGG 730 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 TGAAAGATCCGCCAAGGAAGGACCNAGCAATTTNGGCCCCCGAGGTTACAAAGACAAGAG 790 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 CCTGGTCGGCNNATTTTTACCCGGTTCCCCAAGGTTGGGTTGGCCCTTGGGCACGNACGA 850 consensus_5558#1 ------------------------------------------------------------ consensus_5558#2 ------------------------------------------------------------ consensus_5558#0 TTGGGACNTANCAGACGGTTTGGGNGCGCGAANATATGGGAGCAGGCTNGGANGAAAGAN 910 consensus_5558#1 ----------- consensus_5558#2 ----------- consensus_5558#0 NCTCANACACG 921 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||