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Anopheles gambiae
cluster # 5561 cluster # 5561       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5561#0 length = 919 sequences # 3  
consensus_5561#1 length = 654 sequences # 1  

consensusID : consensus_5561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 919
fasta sequence
                              [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC]

[+] EMBL BM604460             [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCACGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGA                                                                                                                                                                                                                                                   ]
[+] EMBL BX604109             [                           GAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM582402             [                                                                                                                                                                                                                                                                                 CCGAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCCAAGAAGAATGGCGGCGAGGGGGCCGCATTGGCAGCACCGCCGCCGGCACCGGCAGCAACAGCAGCT      GCAGCAGACCTGGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC]


>consensus_5561#0 CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATC CAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAG GAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTG TCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGG CGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAG ATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAAC CTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCC AAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT TCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCG AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA CGTCCGCCAAAAAACCTGC



consensusID : consensus_5561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG]

[+] EMBL BM651993             [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG]


>consensus_5561#1 CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATT CGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGA AGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCG CACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTG GCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCC ACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCT CCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCA AGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCAC GTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGA AGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAA ATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5561#0      CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATC 60
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAG 120
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      GAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTG 180
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      TCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGG 240
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAG 300
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      ATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAAC 360
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCC 420
consensus_5561#1      ----------------------------------------------------------CC 2
                                                                                **

consensus_5561#0      AAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 480
consensus_5561#1      GCCC---ACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 59
                         *   **  *   *********************************************

consensus_5561#0      TCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCG 540
consensus_5561#1      TCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCG 119
                      *********************************** ************************

consensus_5561#0      AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 600
consensus_5561#1      AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 179
                      ************************************************************

consensus_5561#0      GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 660
consensus_5561#1      GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 239
                      ************************************************************

consensus_5561#0      GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 720
consensus_5561#1      GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 299
                      ************************************************************

consensus_5561#0      CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 780
consensus_5561#1      CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 359
                      ************************************************************

consensus_5561#0      TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 840
consensus_5561#1      TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 419
                      ************************************************************

consensus_5561#0      AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 900
consensus_5561#1      AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 479
                      ************************************************************

consensus_5561#0      CGTCCGCCAAAAAACCTGC----------------------------------------- 919
consensus_5561#1      CGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAG 539
                      *******************                                         

consensus_5561#0      ------------------------------------------------------------
consensus_5561#1      AAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGA 599
                                                                                  

consensus_5561#0      -------------------------------------------------------
consensus_5561#1      AATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG 654
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)