These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 919 fasta sequence [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC] [+] EMBL BM604460 [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCACGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGA ] [+] EMBL BX604109 [ GAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAA ] [+] EMBL BM582402 [ CCGAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCCAAGAAGAATGGCGGCGAGGGGGCCGCATTGGCAGCACCGCCGCCGGCACCGGCAGCAACAGCAGCT GCAGCAGACCTGGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC] consensusID : consensus_5561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG] [+] EMBL BM651993 [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5561#0 CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATC 60 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 CAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAG 120 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 GAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTG 180 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 TCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGG 240 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 CGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAG 300 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 ATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAAC 360 consensus_5561#1 ------------------------------------------------------------ consensus_5561#0 CTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCC 420 consensus_5561#1 ----------------------------------------------------------CC 2 ** consensus_5561#0 AAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 480 consensus_5561#1 GCCC---ACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 59 * ** * ********************************************* consensus_5561#0 TCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCG 540 consensus_5561#1 TCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCG 119 *********************************** ************************ consensus_5561#0 AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 600 consensus_5561#1 AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 179 ************************************************************ consensus_5561#0 GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 660 consensus_5561#1 GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 239 ************************************************************ consensus_5561#0 GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 720 consensus_5561#1 GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 299 ************************************************************ consensus_5561#0 CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 780 consensus_5561#1 CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 359 ************************************************************ consensus_5561#0 TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 840 consensus_5561#1 TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 419 ************************************************************ consensus_5561#0 AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 900 consensus_5561#1 AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 479 ************************************************************ consensus_5561#0 CGTCCGCCAAAAAACCTGC----------------------------------------- 919 consensus_5561#1 CGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAG 539 ******************* consensus_5561#0 ------------------------------------------------------------ consensus_5561#1 AAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGA 599 consensus_5561#0 ------------------------------------------------------- consensus_5561#1 AATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG 654 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||