These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTCCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCCATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTTTCATCGGGAGCG] [+] EMBL BM629047 [CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTCCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCCATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTTTCATCGGGAGCG] consensusID : consensus_5562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence [CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA-ATTTGGGCAAAGTAAAGCGTT-CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA-ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG-AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGACTGTAGGCGCCGAACATTCCCACTCTTCCATC] [+] EMBL BM600809 [CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA ATTTGGGCAAAGTAAAGCGTT CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC ] [+] EMBL BM582627 [ ccGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA ATTTGGGCAAAGTAAAGCGTT CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGACTGTAGGCGCCGAACATTCCCACTCTTCCATC] [+] EMBL BX624378 [ TTATCCATCGGAATAGAGGAGTATTCGATANACTTGGGCAAAGTTACGCGTTNCCCGACGAAATCATCCCGAACTGTGCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGATAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCACCCAANACGANGCACCGCCGACAAACAGCCGTCAGCCCGCGACCCAAAGGATAAGAAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATACATCACGCAANNAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5562#0 ------CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCG 54 consensus_5562#1 CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCG 60 *************************************************** consensus_5562#0 GAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTC 114 consensus_5562#1 GAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTC 120 ************************************************************ consensus_5562#0 CCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTT 174 consensus_5562#1 CCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTT 180 ************************************************************ consensus_5562#0 CTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAAC 234 consensus_5562#1 CTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAAC 240 ************************************************************ consensus_5562#0 TACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCC 294 consensus_5562#1 TACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGG------------ 288 ************************************************ consensus_5562#0 ATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCC 354 consensus_5562#1 ----GAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCC 344 ******************************************************** consensus_5562#0 CAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGA 414 consensus_5562#1 CAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGA 404 ************************************************************ consensus_5562#0 TGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAAT 474 consensus_5562#1 TGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAAT 464 ************************************************************ consensus_5562#0 CATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAA 534 consensus_5562#1 CATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAA 524 ************************************************************ consensus_5562#0 CACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC 594 consensus_5562#1 CACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC 584 ************************************************************ consensus_5562#0 GTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTT 654 consensus_5562#1 GTACTACTACTACGACAAGCGCGGTCATCGG-ACTGTAGGCGCCGAACATTCCCACTCTT 643 ******************************* **************************** consensus_5562#0 TCATCGGGAGCG 666 consensus_5562#1 CCATC------- 648 **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||