These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [AATAATAATAATTATAATAATA-ATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAG] [+] EMBL BX610619 [AATAATAATAATTATAATAATA ATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAG] [+] EMBL BX610620 [AATAATAATAATTATAATAATATATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATA ] consensusID : consensus_5564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCTGACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATATTGTTTACA] [+] EMBL BX615806 [TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCTGACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATATTGTTTACA] consensusID : consensus_5564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [TCAGGAATACGTTCGCCAAGATCGGAAGCTAACCTCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCGTACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC] [+] EMBL BX616761 [TCAGGAATACGTTCGCCAAGATCGGAAGCTAACCTCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCGTACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5564#1 ------------------------------------------------------------ consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 AATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCA 60 consensus_5564#1 ------------------------------------------------------------ consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 AGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATT 120 consensus_5564#1 ---------------TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTG 45 consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 TGTAAACAAAGCAAAAGAAGAAACACAAAATATA----TTTTCCGAACCTTCCTCCGTTG 176 consensus_5564#1 GAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACC 105 consensus_5564#2 --------------------------TCAGGAATACGTTCGCCAAGATCGGAAGCTAACC 34 consensus_5564#0 GAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACC 236 *************** ****************** consensus_5564#1 TCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTG 165 consensus_5564#2 TCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCG 94 consensus_5564#0 TCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTG 296 ******* ********* ******** **** ************* ***** ****** * consensus_5564#1 TACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTC 225 consensus_5564#2 TACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC------ 148 consensus_5564#0 TACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTC 356 **** ************* ************************ ********* consensus_5564#1 TGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAG 285 consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 TGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAG 416 consensus_5564#1 ACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCT 345 consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 ACAAACAACTTAGTCTTTGAG--------------------------------------- 437 consensus_5564#1 GACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATAT 405 consensus_5564#2 ------------------------------------------------------------ consensus_5564#0 ------------------------------------------------------------ consensus_5564#1 TGTTTACA 413 consensus_5564#2 -------- consensus_5564#0 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||