These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence [CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA--TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGTAT-GTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACTGTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC] [+] EMBL BM586812 [CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATA ] [+] EMBL BM608090 [ ccgCATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGTAT GTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACTGTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC] [+] EMBL BM583457 [ ccgGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGGGGGTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAATAATTCAGC AAGAAATCGTGTTTCGTCAACATTTTAACCCATTTTTTTTTATTGCCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGGACTAGCAGAGACTAGAAAGATATATGAATTTTATTATTCTTCAACTTGTTCACCCATGCACATCAATGGCAGTATGGGGTTCATGGTAACTCCTATGTAGAATGGACCTAGAACTATA ] consensusID : consensus_5573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGGTGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG] [+] EMBL BM591253 [CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGGTGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5573#0 ------------------------------------------------------------ consensus_5573#1 CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGG 60 consensus_5573#0 --CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTG 58 consensus_5573#1 TGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTG 120 * * * ** ******************************************* consensus_5573#0 TACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCAT 118 consensus_5573#1 TACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCAT 180 ************************************************************ consensus_5573#0 TAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGA 178 consensus_5573#1 TAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG- 239 *********************************************************** consensus_5573#0 TAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATT 238 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 GAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATG 298 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 TTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCT 358 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 ATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACAT 418 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 TTTAACCCATTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTC 478 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 GACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCA 538 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 CAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGAC 598 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 GTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACT 658 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 AGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGT 718 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 ATGTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACT 778 consensus_5573#1 ------------------------------------------------------------ consensus_5573#0 GTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC 823 consensus_5573#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||