cluster # 5573

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Anopheles gambiae
cluster # 5573 cluster # 5573 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5573#0 length = 823 sequences # 3

consensus_5573#1 length = 239 sequences # 1

consensusID : consensus_5573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 823
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA--TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGTAT-GTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACTGTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC]

[+] EMBL BM586812             [CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA  TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATA                                                                                                                                                           ]
[+] EMBL BM608090             [                                                                                                                                  ccgCATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTTTAACCCA  TTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGTAT GTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACTGTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC]
[+] EMBL BM583457             [                                                                                                                                                                                                         ccgGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGGGGGTTATATGTTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTATCATGAGTAACGAAGCGTATATTAATAATTCAGC  AAGAAATCGTGTTTCGTCAACATTTTAACCCATTTTTTTTTATTGCCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGGACTAGCAGAGACTAGAAAGATATATGAATTTTATTATTCTTCAACTTGTTCACCCATGCACATCAATGGCAGTATGGGGTTCATGGTAACTCCTATGTAGAATGGACCTAGAACTATA                                                             ]




>consensus_5573#0
CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTA
CTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTA
GGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGATA
AAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATTGA
AGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATGTT
TTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCTAT
CATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACATTT
TAACCCATTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTCGA
CACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCACA
ACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGACGT
TTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACTAG
AAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGTAT
GTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACTGT
AAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC

consensusID : consensus_5573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGGTGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG]

[+] EMBL BM591253             [CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGGTGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTGTACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCATTAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG]




>consensus_5573#1
CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGG
TGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTG
TACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCAT
TAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5573#0      ------------------------------------------------------------
consensus_5573#1      CCGCGGAATGTTTGTTTACTTCTTTAAAACACTGAGCTCAGCTGTATGAGTATTAGTTGG 60
                                                                                  

consensus_5573#0      --CCGCCCACGCGTCCGAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTG 58
consensus_5573#1      TGTGACTGAAACCCCCCAAAAAGAAATGCATGCAATTCAATAGGTGATGGAAAGTTACTG 120
                           *  *  *  ** *******************************************

consensus_5573#0      TACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCAT 118
consensus_5573#1      TACTTAATTCTACATTATGGCCTATATCAAGTATTTTACGTAATGGTTATGAAAGACCAT 180
                      ************************************************************

consensus_5573#0      TAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTGA 178
consensus_5573#1      TAGGAATGAATGTTACATTAATGTCAAATATATGTGTTATTGAGATGTGCTGCTAATTG- 239
                      *********************************************************** 

consensus_5573#0      TAAAACGTGTATGGCATCTTTACGATGTAAAATGTGGGTAGCGATGAGAGCTGTTGTATT 238
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      GAAGTAGAGCGACTTTAGTGATAGCGTGAAACATAGTGTTAGTTGAACGTGTTTTATATG 298
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      TTTTATGGACATACGACTAACAAGAAGGATTAGTATGATATGTTTTCCGCAATGATATCT 358
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      ATCATGAGTAACGAAGCGTATATTAGTAATTCAACAAAAAAAATTGTTTTTCGTCAACAT 418
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      TTTAACCCATTTTTTTATTACCGCGCGCGTCTGTTTGTCGATCCTTCAATCACACTGCTC 478
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      GACACACTTTTGTTTGGAATCACCGAACCTTCCATTACTACTACTCCTATCTACTTAGCA 538
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      CAACTTCTTATGAGTGATGAACTGTTTGAACTAAAACTGATTTATTGATACTGTGATGAC 598
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      GTTTTTGTCGGTTTGAGAAATCGTAAAAAAGTATTTTTCCCCCCTGAACTAGCAGAGACT 658
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      AGAAAGATATATGAATTTTATCATTCTTCAACCTGTTCGCCCATGCACATCAATGGCAGT 718
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      ATGTGTTCATGGTAACTCCTATGTAGAATGTACCTAGAACTATATAATGCAAGCATGACT 778
consensus_5573#1      ------------------------------------------------------------
                                                                                  

consensus_5573#0      GTAAGACTGTACTGAACAAAAACTAGCCCTGTTTTAATTAAATGC 823
consensus_5573#1      ---------------------------------------------