cluster # 5582

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Anopheles gambiae
cluster # 5582 cluster # 5582 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5582#0 length = 704 sequences # 1

consensus_5582#1 length = 661 sequences # 2
consensus_5582#2 length = 635 sequences # 1

consensusID : consensus_5582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCTCCAAGCGCCAATCGTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACATGCAGCGGCGCCGCCGGTCCGCCTACCACGTGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCAGTGCGGCGACCGTCTGCAGCAAGCTAACACTGCCGCTCGAGGTGAAGGCGGACGATATGTTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCAGGAAGAAGGGCTGTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAACTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGGGCGAGATGCCGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGGTGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG]

[+] EMBL BM585206             [CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCTCCAAGCGCCAATCGTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACATGCAGCGGCGCCGCCGGTCCGCCTACCACGTGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCAGTGCGGCGACCGTCTGCAGCAAGCTAACACTGCCGCTCGAGGTGAAGGCGGACGATATGTTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCAGGAAGAAGGGCTGTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAACTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGGGCGAGATGCCGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGGTGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG]




>consensus_5582#0
CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCAC
CAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTC
TTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAAC
ATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCTCCAAGCGCCAATCGTTT
GCCGAGGCCAGCGACTCGAAGATGGTGTACATGCAGCGGCGCCGCCGGTCCGCCTACCAC
GTGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCAGTGCGGCG
ACCGTCTGCAGCAAGCTAACACTGCCGCTCGAGGTGAAGGCGGACGATATGTTCAAGTAC
TACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCAGGAAGAAGGGCTGTACAATCTG
TACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAACTTTAACGTC
GACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGGGCGAGATGCCGCTGCCGGCC
CTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGGTGTTTATACTG
CGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG

consensusID : consensus_5582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 661
fasta sequence

                              [CCGCCCACGCGTCCGTTGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAAC-GGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGACGCGGTGTGC]

[+] EMBL BM593280             [CCGCCCACGCGTCCGTTGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAAC GGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGACGCGGTGTGC]
[+] EMBL BM583901             [                  ccgTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTGCGGTACAGAGTAACGGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCAC                                                           ]




>consensus_5582#1
CCGCCCACGCGTCCGTTGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGCAAAGGGT
CGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCG
CTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACA
GGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGA
GCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGT
CGGCCGCCGTCGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCT
TGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGACGTGCGGGTGTCCCACTTTC
GCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCG
ATTCGATGAACCCGTACCTGGACTCGCATCAAGACAAATGCATACTGACCGAACCGGTTG
CGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGC
ACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGATCGGACGCGGTGTG
C

consensusID : consensus_5582#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTTGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGAACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGAATCGGAG]

[+] EMBL BM594225             [CCGCCCACGCGTCCGCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCATTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGCACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTTGCCCGACGGCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTGCTCGAACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGGAGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAACATTCACCTGTACAAGGAATCGGAG]




>consensus_5582#2
CCGCCCACGCGTCCGCCCGCAGTGAAAACAGCGCAAAGGGTCGACGGAACTTTGTCATCA
TTTTTCCGAGCTGGCACGAGCGCTTGCTGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCG
CTACCGCTGGTCAACGGGAAGCAGGCATAAGGTAGAAGACAGGGTCAAGGCGCGTACGGC
ACCGAGCTAAACTGCACGCCGCCAGTCCGGGAGAAGGATGAGCCGGAGGTGGACCGGACC
GCTGCGGTCGGCGGCGGCACTGATCGTTGCACTGCTCGTGTCGGCCGCCGTTGCCCGACG
GCACCACCTGGAAGTGCGGGATGATTTCCGCCGGTACATCTTGCTCAGCACGTTCGGGTT
TTACGCCGGCGGAGTGCTCGAACGTGCGGGTGTCCCACTTTCGCGTCGATCCGGGCACGG
AGGAAAACATGTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAACCCGTACC
TGGACTCGCACCAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGAC
CGATCGTGTTCTTCAAGATGGACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGG
ATTGGCAGAACATTCACCTGTACAAGGAATCGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5582#1      CCGCCCACGCGTCCGT-------TGTGTTTATACTGGTCGCCCCGCAGTGAAAACAGCGC 53
consensus_5582#2      CCGCCCACGCGTCCG--------------------------CCCGCAGTGAAAACAGCGC 34
consensus_5582#0      CCGCCCACGCGTCCGGACAAAACCATGTCCGATTCGATGAACCCGTACCTGGACTCGCAC 60
                      ***************                          **** *     *   ** *

consensus_5582#1      AAAGG-----GTCGACGGAACTTTGTCATCATTTTTCCGAGC--TGGCACGAGCGCTTGC 106
consensus_5582#2      AAAGG-----GTCGACGGAACTTTGTCATCATTTTTCCGAGC--TGGCACGAGCGCTTGC 87
consensus_5582#0      CAAGACAAATGCATACTGACCGAACCGGTCGCGGTACAGAGTAACGGACCGATCGTGTTC 120
                       ***      *   ** ** *       **    * * ***    **  *** **  * *

consensus_5582#1      TGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGA-AGCAGG- 164
consensus_5582#2      TGGGGGAGGGTGCGCTGGGTCGATAAAGTTGCGCTACCGCTGGTCAACGGGA-AGCAGG- 145
consensus_5582#0      TTCAAGATGG-ACCTCAAGCAGAATGTCGTGCACGTCAGCTGTTCCAAGGATTGGCAGAA 179
                      *    ** **  *     *  **      *** *  * **** ** * **    ****  

consensus_5582#1      CATAAGGTAGAAGACAGGGTCAAGGCGCGTAC-GGCACCGAGCTAAACTGCACGCCGCCA 223
consensus_5582#2      CATAAGGTAGAAGACAGGGTCAAGGCGCGTAC-GGCACCGAGCTAAACTGCACGCCGCCA 204
consensus_5582#0      CATTCACCTGTACAAGGATCGGAGTGGTGTGCCGGCCCTGCGCT---CCAAGCGCCAATC 236
                      ***      * * *  *     **  * ** * *** * * ***   *    ****    

consensus_5582#1      GTCCGG-GAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGA 282
consensus_5582#2      GTCCGG-GAGAAGGATGAGCCGGAGGTGGACCGGACCGCTGCGGTCGGCGGCGGCACTGA 263
consensus_5582#0      GTTTGCCGAGGCCAGCGACTCGAAGATGGTGTACAT-GCAGCGG-CGCCGCCGGT-CCGC 293
                      **  *  ***      **  ** ** ***     *  ** **** ** ** ***  * * 

consensus_5582#1      TCGTTGCACTGCTCGTGTCGGCCGCCGTCGC-CCGA---CGGCA-CCACCTGGAAGTGCG 337
consensus_5582#2      TCGTTGCACTGCTCGTGTCGGCCGCCGTTGC-CCGA---CGGCA-CCACCTGGAAGTGCG 318
consensus_5582#0      CTACCACG-TGCCCGAGTCGGACGATTTTGCGCCGGGCGCGGCGGCCATCGACGGCGGCA 352
                            *  *** ** ***** **   * ** ***    ****  *** *       ** 

consensus_5582#1      GGATGATTTCCGCCGGTAC--ATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTG 395
consensus_5582#2      GGATGATTTCCGCCGGTAC--ATCTTGCTCAGCACGTTCGGGTTTTACGCCGGCGGAGTG 376
consensus_5582#0      GTGCGGCGACCGTCTGCAGCAAGCTAACACTGC-CGCTCGAGGTGAAGGCGGACGATATG 411
                      *   *    *** * * *   * **  * * ** ** *** * *  * ** * **   **

consensus_5582#1      CTCGA-CG-TGCGGGT---GTCCCACT-TTCGCGTCGAT-CCGGGCACGGAGGAAAACAT 448
consensus_5582#2      CTCGAACG-TGCGGGT---GTCCCACT-TTCGCGTCGAT-CCGGGCACGGAGGAAAACAT 430
consensus_5582#0      TTCAAGTACTACAGCTTCAATTTTGCCATTTACGTCGCCACCAAGCA-GGAAGAAGGGCT 470
                       ** *    * * * *    *    *  **  *****   **  *** *** ***    *

consensus_5582#1      GTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAAC---CCGTAC---CTGGA 502
consensus_5582#2      GTTTGGCCTTTCGTTGGACAAAACCATGTCCGATTCGATGAAC---CCGTAC---CTGGA 484
consensus_5582#0      GTACAATCTGTACTTCCACAGCTGCCCGAACTACGCGCCGAACAGTCTGTACGAGCTGAA 530
                      **     ** *  **  ***    *  *  * *  **  ****   * ****   *** *

consensus_5582#1      CTC--GCATCAAGAC-----AAATGCATACTGAC--CGAACCGGTTGCGGTACAGAGTAA 553
consensus_5582#2      CTC--GCACCAAGAC-----AAATGCATACTGAC--CGAACCGGTCGCGGTACAGAGTAA 535
consensus_5582#0      CTTTAACGTCGACATCGAGGAGAAGAACAGTGGCAACTATCTGTCCGCGG-GCGAGATGC 589
                      **    *  * * *      * * * * * ** *  * * * *   ****  *    *  

consensus_5582#1      CGG-ACCGATCGTGTTCTTCAAGATG--GACCTCAAGCAGAATGTCGTGCACGTCAGCTG 610
consensus_5582#2      CGG-ACCGATCGTGTTCTTCAAGATG--GACCTCAAGCAGAATGTCGTGCACGTCAGCTG 592
consensus_5582#0      CGCTGCCGGCCCTGTACTTCATGATGTCGGTGCTGTTCTTCCTGTCCGGTCTGTTCTGGG 649
                      **   ***  * *** ***** ****  *        *    ****  *   **     *

consensus_5582#1      TTCCAAGGATTGGCA-GAACATTCACC---TGTACAAGGA-TCGGACGCGGTGTGC 661
consensus_5582#2      TTCCAAGGATTGGCA-GAACATTCACC---TGTACAAGGAATCGGAG--------- 635
consensus_5582#0      TGTTTATACTGCGCAAGAGCAAGCATCCGCTGTTCAAGATCCACTATCTGATGGG- 704
                      *    *   *  *** ** **  ** *   *** ****       *