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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 995 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATTGTAATAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATCGCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACGATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTTGTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAGAGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT]
[+] EMBL BM584180 [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATTGTAATAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCC ]
[+] EMBL BM591037 [ ccgATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCG ]
[+] EMBL BX624172 [ TCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGGCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTATACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATCGCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACGATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTTGTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAGAGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT]
consensusID : consensus_5584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[ATCGTCTGCTCACCATCATGTGTTGAATATTGTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATCAAGCNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTCACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA]
[+] EMBL BX619852 [ATCGTCTGCTCACCATCATGTGTTGAATATTGTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATCAAGCNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTCACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5584#0 CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATT 60
consensus_5584#1 -----------------------------ATCGTCTGCTCACCATCATGTGTTGAATATT 31
******************************
consensus_5584#0 GTAATA-GCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAA 119
consensus_5584#1 GTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAA 91
***** *****************************************************
consensus_5584#0 TGATAGGCGCAC----------TGACTCACCAGCACATTCGTCTCCGGAAACATCACATC 169
consensus_5584#1 TGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATC 151
** ********* **************************************
consensus_5584#0 CTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCC 229
consensus_5584#1 CACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCC 211
* **********************************************************
consensus_5584#0 TCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTT 289
consensus_5584#1 TCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTT 271
*********** ************************************************
consensus_5584#0 CACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATT 349
consensus_5584#1 CACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATT 331
************************************************************
consensus_5584#0 AATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTAC 409
consensus_5584#1 AATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTAC 391
************************************************************
consensus_5584#0 GGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGT 469
consensus_5584#1 GGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGT 451
************************************************************
consensus_5584#0 CACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAG 529
consensus_5584#1 CACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATC-AAG 510
********* **** ********** ************************** ** ***
consensus_5584#0 CTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTC 589
consensus_5584#1 CNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTC 570
* * ********* *** ** * **** ******** ******** **** ********
consensus_5584#0 ACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATC 649
consensus_5584#1 ACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA---------- 620
********************** *********** ***************
consensus_5584#0 CTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGG 709
consensus_5584#1 ------------------------------------------------------------
consensus_5584#0 TACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATC 769
consensus_5584#1 ------------------------------------------------------------
consensus_5584#0 GCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACG 829
consensus_5584#1 ------------------------------------------------------------
consensus_5584#0 ATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTT 889
consensus_5584#1 ------------------------------------------------------------
consensus_5584#0 GTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAG 949
consensus_5584#1 ------------------------------------------------------------
consensus_5584#0 AGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT 995
consensus_5584#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||