These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 724 fasta sequence [CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCTTACTTTTAACCCCGTGTGTATCTGCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGAGATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAGGAGGA] [+] EMBL BM651112 [CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCTTACTTTTAACCCCGTGTGTATCTGCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACT ] [+] EMBL BM584436 [ ccggacGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGAGATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAGGAGGA] consensusID : consensus_5588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [CCGCGGACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT--GTGT--GTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGGAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC] [+] EMBL BM635420 [CCGCGGACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT GTGT GTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGGAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAG ] [+] EMBL BM614337 [ ccgAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGATCACGGCACTGGCGGCCACTGGTGCGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGATACGCCACTGTCGGAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5588#0 CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCT-TACTTTTAACCCCGTGTGTATCT 59 consensus_5588#1 CCGCGG--ACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTA--TAGGTTGGCCCCC 56 *** * * * ** ** * * * *** *** ** * * consensus_5588#0 GCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTT 119 consensus_5588#1 GATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT----GTGTGTT 112 * ** **************************************** *** *** consensus_5588#0 TATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAA 179 consensus_5588#1 TATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCC-GAAGGAAGAGAGGAA 171 ******************************************** **** ********** consensus_5588#0 GCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAA 239 consensus_5588#1 GCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAA 231 ************************************************************ consensus_5588#0 GATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGT 299 consensus_5588#1 GATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGC 291 ***************************************************** ***** consensus_5588#0 GCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGC 359 consensus_5588#1 GCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGC 351 ************************************************************ consensus_5588#0 ACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCA 419 consensus_5588#1 ACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCA 411 ************************************************************ consensus_5588#0 CTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCG 479 consensus_5588#1 CTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCG 471 ************************************************************ consensus_5588#0 GAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCAT 539 consensus_5588#1 GAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCAT 531 ******************** *************************************** consensus_5588#0 CATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGAT 599 consensus_5588#1 CACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGAT 591 ** ********************************************************* consensus_5588#0 GCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGA 659 consensus_5588#1 GCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC--- 648 ** ***************************************** ************ consensus_5588#0 GATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAG 719 consensus_5588#1 ------------------------------------------------------------ consensus_5588#0 GAGGA 724 consensus_5588#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||