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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1197 fasta sequence
[CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGTTTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGTTATGGAGGCGTTTTAGGGCGAATTACGGAAAGTGAGTCAACCTGCGTATACGGTTCGGCTCCGACTGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGATCGTGCTCTCTTGGATTAAGGCGGCCGA-GCG-GGACGGACACACACAAAAAGGGCTTAGGATTAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGCCCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGATGCAACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCGGGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTCCGTGCACGAAGTAGCGTTCCATCATCAGGTGTCCCCAAATGGGCACCTCTATCCGGCATCGCNCAATTGGGACCCGCATCAGCGCCGCCGGTATCAGCGCCATCGCAAGTTTGNGCAACCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACNGCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGGCNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCGCGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAATAGGGCCA]
[+] EMBL BM641240 [CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGTTTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGTTATGGAGGCGTTTTAGGGCGAATTACGGAAAGTGAGTCAACCTGCGTATACGGTTCGGCTCCGACTGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGATCGTGCTCTCTTGGATTAAGGCGGCCGA GCG GGACGGACACACACAAAAAGGGCTTAGGATTAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGCCCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGA ]
[+] EMBL BX468335 [ gcaagaatCGGCCGAGGCGNNGACGGTCACACAC AAAAGGGCTTAGGATTAATAAAT TATATTATTGTATTG TTTTAAATAAGTACAAAATCGTTTTAGCCAAGCCCCACAAATATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATCGTTTCGTGTTGTAAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCGTTTTCTTCCGTGTCCCGCTCACACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTGATGCAACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCGGGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTCCGTGCACGAAGTAGCGTTCCATCATCAGGTGTCCCCAAATGGGCACCTCTATCCGGCATCGCNCAATTGGGACCCGCATCAGCGCCGCCGGTATCAGCGCCATCGCAAGTTTGNGCAACCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACNGCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGGCNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCGCGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAATAGGGCCA]
consensusID : consensus_5589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence
[CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCTGTACGCAGTGGTCTAGCTGTAGGTAAAGGTGCTTGATCTCCTGCAACCGTACTGCGCGATGCTTGCCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGCTTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCTCGCCAGCATGTTCGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAGTGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAAAAAATATCCCAAACCAGTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTCCACTCGGACGACGACACTGTCGCGGCAACGGTAACGATCCGCTCTAGACATTGGCTGTACCGTACCGTCTCACTGTAGCCCCTGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGTACGGCGGTAAAGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGCACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTCGATAGCAAATGA]
[-] EMBL CNS09OVJ [CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCTGTACGCAGTGGTCTAGCTGTAGGTAAAGGTGCTTGATCTCCTGCAACCGTACTGCGCGATGCTTGCCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGCTTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCTCGCCAGCATGTTCGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAGTGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAAAAAATATCCCAAACCAGTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTCCACTCGGACGACGACACTGTCGCGGCAACGGTAACGATCCGCTCTAGACATTGGCTGTACCGTACCGTCTCACTGTAGCCCCTGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGTACGGCGGTAAAGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGCACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTCGATAGCAAATGA]
[-] EMBL CNS092M2 [ GGTAGCAGAACAGTATCACCCAGATGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACATTGCTCAGGAGTGCGCGCCGCGTAGGTACAGTTGAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCGGTGCATATGCAATGTAATTATAAGGCTCTACTAATACACATCATTACGTGATGGTAAATAGATGAATAAATAAATAAATGCCCGTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5589#0 CCGGAACGTGCCGGCGGTGAGCAGACATCGGGCCTGCTTAAAGTACGCCCTAGAGGGTAG 60
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 GTCTCGGGCCAGACAGCATGGT-ACATTGCTCAGCAGCTGAGCGCAGCGTAGGTACAGTT 119
consensus_5589#1 ---------CGAGGAACACGTTCGTCACGATCGCCACTTCGTACGAGCGCGTAATCAGCT 51
* * ** * * * ** ** * **** *** *
consensus_5589#0 GAAAAGATTGGTACAGTTGCAGCTTCCTAAGGTGCTGCACATCGCGCCCCTCGAACATGG 179
consensus_5589#1 GTACGCAGTGGTCTAGCTGTAGGTA---AAGGTGCTTGATCTCCTGCAACCGTACTGCGC 108
* * * **** ** ** ** * ******** * ** ** * * *
consensus_5589#0 CGTGCTTGAGCGGCGAAACCTGCACAGGACCACACGTGCCACACAATACTGGCGTACGGT 239
consensus_5589#1 GATGCTTG----------CCAATGGCAGTGCGCAGCTGTTGGTTAACTGTATGCTGCAGC 158
****** ** * * ** ** ** * * * *
consensus_5589#0 TTGTACACCAACTCAGTGCATATGCAATATAATTATAAGGCTCTACTAATGCACATCTGT 299
consensus_5589#1 TTGTAAATTAGTACCGTACCGGCATAGTACTGTGCTAGCGACATGCT--CGCCAGCATGT 216
***** * * * ** * * ** * ** * * ** ** ***
consensus_5589#0 TATGGAGGCGTTTTAGGGCGAATTACGGAAAGTG-AGTCAACCTGCGTATACGGTTCGGC 358
consensus_5589#1 T-CGGCAGCACATAGGCGCCCATGGTGAACAGTGTAGACCAAATGCCCCCATAGAACAAG 275
* ** ** * * ** ** * * **** ** * * *** * * *
consensus_5589#0 TCCGAC-TGGCTGGTCACTCAGCGAGCCGAGAGGCCACTCAGCACGATCGAAAGGACGAT 417
consensus_5589#1 TGAGCCACCGCGAGCCCCACACCGGAGGTAAGGGTAA---AAAATATCCCAAACCA---- 328
* * * ** * * * ** ** * ** * * * * *** *
consensus_5589#0 CGTGCTCTCTTGGATTAAGGCGGCCGAGCGGGACGGACACACACAAAAAGGGCTTAGGAT 477
consensus_5589#1 -GTACAGCCTGAGGCGAAGGTAGAGCAGCAGTTCAGTC-CACTCGGACGACGACACTGTC 386
** * ** * **** * *** * * * * *** * * * *
consensus_5589#0 TAATAAATTATATATTACTGTTTTGTTTTTTTAATAAGTACAACGTCGTTTTAGCAAAGC 537
consensus_5589#1 GCGGCAACGGTAACGATCCGCTCTAGACATTGGCT--GTACCGTACCGTCTCACTGTAGC 444
** ** * * * * ** * **** *** * * ***
consensus_5589#0 CCCACAAAGATCACAAAAGTGGCGACGAGAAAAGTTAATGTGATC--GTTT-CGTGTTGT 594
consensus_5589#1 CCC-TGAGCATGGTCTGCACGGTGATGCATAGGTTCAGCACCATCTCGTTCACGTACAGT 503
*** * ** ** ** * * * * *** *** *** **
consensus_5589#0 AAAGTGCTGACCAAATTTTAATTCGTTTTTTGTTCG--TTTTCTTCCGTGTCCCGCTCAC 652
consensus_5589#1 ACGGCGGTAA--AGAACGGAATCGGCAGTTCGAGCAGCTTTACGGTCGCTTGGTAGCAGC 561
* * * * * * * *** * ** * * *** * ** * *
consensus_5589#0 ACACATACACCCACACAATTGCGCCACCACGTCCCAAGAAGCGCAAGATGAACCCCGCTG 712
consensus_5589#1 ACAGTATCACCCAGATGAACGTGCCGGCG-------GTGAGCAGACATCGGGCCTGCTTA 614
*** ****** * * * *** * *** * * ** *
consensus_5589#0 ATGCA-ACGATGGATTTACCGACGGAGGAGGAGCAGCGACGTGCATCCTTAGGCCGGCCG 771
consensus_5589#1 AAGTACGCCCTAGAAGGTAGGTCTCGGGCCAGACAGCATGGTACAT--------TGCTCA 666
* * * * * ** * * ** **** ** *** * *
consensus_5589#0 GGATTTNTCAACCCGGCGGTGATGCAGCAACCCGGAGCATCGCGAGCCGCACGTTCCCTC 831
consensus_5589#1 GGA---GTGCGCGCAGCGTAGGTACAGTTGAAAAGATTGGTAC-AGTTGCAGCTTCCTAA 722
*** * * * *** * * *** ** * ** *** ****
consensus_5589#0 CGTGCACGAAGTAGCGTTCCATCATCA-GGTGTCCCCAAATGGGCACCTCTATCCGGCAT 890
consensus_5589#1 GGTGCTGCACATCGCGCCCCTCGAACATGGCGTGCTTGAGCGGCGAAACCTGCACAGGAC 782
**** * * *** ** * ** ** ** * * ** * ** * * *
consensus_5589#0 CGCNCAATTGGGACCCGCATCAGCGCCGC-CGGTATCAGCGCCATCGCAAGTTTGNGCAA 949
consensus_5589#1 CACAC----GTGCCACACAATACTGGCGCACGGTTTGTGCACCAACTCG-----GTGCAT 833
* * * * * * * ** * * *** **** * ** *** * * * ***
consensus_5589#0 CCGGCATCGCAAAACGGGGCTCAGCTNGTAGTGGATAACCGCCGTACTNCCTGGCAAACN 1009
consensus_5589#1 ATGCAATGTAATTATAAGGCTCTACTAATAC------ACATCATTACGTGATGGTAAATA 887
* ** * * ***** ** ** ** * *** *** ***
consensus_5589#0 GCTGAANATTGATGCAGGGGAACCAAAAGTTGGAGCCGCNAGGGCGAAGCAAGGGCAGGG 1069
consensus_5589#1 GATGAATA--AATAAATAAATGCCC---GTTCGA-TAGCAAATGA--------------- 926
* **** * ** * ** *** ** ** * *
consensus_5589#0 CNTCTNATTTGACGGTAAAACAGTAAAGTGNACCCANGGGGANAAGGCAAGGCGAAGGCG 1129
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CGGGAGTTATAGACGGCCAGANGTTNGCAATCCGAGCAGGCAAGGGCAAGGGGGAAGGAA 1189
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 TAGGGCCA 1197
consensus_5589#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||