These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_56#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT] [+] EMBL BX623417 [GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT] consensusID : consensus_56#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG] [+] EMBL BM580678 [AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_56#0 GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAA 60 consensus_56#1 --------AGCAACCAAAACAAAT-ATGTAAAACAAAAGTGTACGAAACATTTTGGCCCT 51 * * * ** ** * * * * * ** ** consensus_56#0 ATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATG 120 consensus_56#1 TTTGTGTGTATGTGT-GTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAG 110 *** * ** * * ** ** * * * ** ** * * * consensus_56#0 CCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGG 180 consensus_56#1 TTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCT- 169 **** * * * * * * ** * *** consensus_56#0 CACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTT---TACATTCA 237 consensus_56#1 TGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCG 229 ** * * * * * * *** * * ** * * * * * ** * consensus_56#0 AAGA-ACAGCGAAACCGTT-------ACGCTTCCAGTTG-----CGCGATATTCCAC--- 281 consensus_56#1 TGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCC 289 * ** * **** *** *** ** *** * * * * *** consensus_56#0 GCTGACACGCACGCTGAACG--AGCAGCGGAAGAGGGGTGAG---AGGAGTGGTGAAGAA 336 consensus_56#1 ACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAG 349 ** ** * * ** * ** ** * * * * * * *** ** * * * consensus_56#0 AGAA-GCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAAT----AGAATCGTGTAAGTG 391 consensus_56#1 CGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAA 409 ** * **** * * * ** * ** * *** * *** * * ** consensus_56#0 TGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGAT 451 consensus_56#1 GCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAA 469 * * * * * * * * * * * * * * * ** consensus_56#0 CCTGCCAGCGCATTTTTGGAGGATGAG--------CAACTCCGTTCAC--CGGCCTGGGG 501 consensus_56#1 AAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGG 529 * ** * ** * *** * * ** * * * ** consensus_56#0 CCATTCTTGCTTAATAAAAAAAAATGTGTGGT--CGCTCGTTTGTTTCTCTCTCTCTCTG 559 consensus_56#1 TTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTC-TCTCTCTCTCTCTCTCTCTG 588 * * * * * * ** * ***** * * * ************** consensus_56#0 CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 619 consensus_56#1 CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 648 ************************************************************ consensus_56#0 AGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGA 679 consensus_56#1 AGAGATAGAG-------------------------------------------------- 658 ********** consensus_56#0 GAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAAT 739 consensus_56#1 ------------------------------------------------------------ consensus_56#0 TGTTACTAGTTGNGGNACT 758 consensus_56#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||