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Anopheles gambiae
cluster # 56 cluster # 56       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_56#0 length = 758 sequences # 1  
consensus_56#1 length = 658 sequences # 1  

consensusID : consensus_56#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence
                              [GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT]

[+] EMBL BX623417             [GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT]


>consensus_56#0 GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAA ATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATG CCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGG CACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAG AACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAAC GAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGT AGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTT CTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCA ACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGT TTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTT TTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAG CGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGC ACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT



consensusID : consensus_56#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence
                              [AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG]

[+] EMBL BM580678             [AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG]


>consensus_56#1 AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGT ATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTG ACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTA CGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTA AAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTG TGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCT TTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATAT ACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGAT AAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCAC TCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGC GAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_56#0      GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAA 60
consensus_56#1      --------AGCAACCAAAACAAAT-ATGTAAAACAAAAGTGTACGAAACATTTTGGCCCT 51
                                 * * *    ** ** *    *   *   *  * **  **        

consensus_56#0      ATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATG 120
consensus_56#1      TTTGTGTGTATGTGT-GTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAG 110
                     ***  *  **  *  * **   **     *  * * **  **      *    *    *

consensus_56#0      CCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGG 180
consensus_56#1      TTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCT- 169
                         ****   *          *   *   *   * *     **   *     ***   

consensus_56#0      CACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTT---TACATTCA 237
consensus_56#1      TGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCG 229
                      ** *    *  *    * * * *** * * **    *  *   * *    * **  * 

consensus_56#0      AAGA-ACAGCGAAACCGTT-------ACGCTTCCAGTTG-----CGCGATATTCCAC--- 281
consensus_56#1      TGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCC 289
                       * ** *  **** ***       ***  ** *** *     *   *   * ***   

consensus_56#0      GCTGACACGCACGCTGAACG--AGCAGCGGAAGAGGGGTGAG---AGGAGTGGTGAAGAA 336
consensus_56#1      ACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAG 349
                     ** **  *   * **   *  **  ** * * * *  *  *   *** **  *  * * 

consensus_56#0      AGAA-GCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAAT----AGAATCGTGTAAGTG 391
consensus_56#1      CGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAA 409
                     **   *   **** * * * ** *      **  *  ***    * *** * * **   

consensus_56#0      TGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGAT 451
consensus_56#1      GCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAA 469
                          * * *  *       * *  *   *  *    *  * *     * *  *  ** 

consensus_56#0      CCTGCCAGCGCATTTTTGGAGGATGAG--------CAACTCCGTTCAC--CGGCCTGGGG 501
consensus_56#1      AAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGG 529
                               *  **   * ** *           *** * * ** *  *    *  **

consensus_56#0      CCATTCTTGCTTAATAAAAAAAAATGTGTGGT--CGCTCGTTTGTTTCTCTCTCTCTCTG 559
consensus_56#1      TTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTC-TCTCTCTCTCTCTCTCTCTG 588
                       *   *   * *      *   *  **  *  ***** * * * **************

consensus_56#0      CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 619
consensus_56#1      CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 648
                    ************************************************************

consensus_56#0      AGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGA 679
consensus_56#1      AGAGATAGAG-------------------------------------------------- 658
                    **********                                                  

consensus_56#0      GAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAAT 739
consensus_56#1      ------------------------------------------------------------
                                                                                

consensus_56#0      TGTTACTAGTTGNGGNACT 758
consensus_56#1      -------------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)