cluster # 5604

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Anopheles gambiae
cluster # 5604 cluster # 5604 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5604#0 length = 657 sequences # 2

consensus_5604#1 length = 623 sequences # 1
consensus_5604#2 length = 609 sequences # 1

consensusID : consensus_5604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [CCGCCCACGCGTCCGCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC]

[+] EMBL BM585665             [CCGCCCACGCGTCCGCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTAT                                                                                                                                                                                                                                                                           ]
[+] EMBL BM646696             [            CCG TTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC]




>consensus_5604#0
CCGCCCACGCGTCCGCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGT
ATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCT
AAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGA
CGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGA
GTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACTAGGACGAGCTGTCCATGCTGGA
GGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAAC
AATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAA
ACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCC
GTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGTCGAGTGCACCGTGTACG
ACGTGATGTTTCACCCAGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGC
TGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC

consensusID : consensus_5604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCCCACGCGTCCGAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACAGTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT]

[+] EMBL BM585990             [CCGCCCACGCGTCCGAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACAGTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT]




>consensus_5604#1
CCGCCCACGCGTCCGAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTT
AACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGG
AACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAG
CTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGT
TACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCC
GAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTG
AAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTC
GAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTGCACTTGGCGTCGAAGAAT
GAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAG
GTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACAGTACAAGGGCACGCCCAGC
TCGTCGGTGGTGCGGGAAAAGCT

consensusID : consensus_5604#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTTGGC]

[+] EMBL BM588616             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTTGGC]




>consensus_5604#2
CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAA
CACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCG
TTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAA
ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG
GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG
AAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC
CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT
ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG
GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC
TACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTG
CACTTTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5604#0      ------------CCGCCCACGCGTCCG--------------------CTTGGCAACGAAA 28
consensus_5604#2      CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAA 60
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      CACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCG 88
consensus_5604#2      CACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCG 120
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      TTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAA 148
consensus_5604#2      TTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAA 180
consensus_5604#1      ----------------CCGCCCACGC-GT-CCGAGCGCATCTCCGCCATCACAACAAAAA 42
                                       **   * ** ** *  ***************************

consensus_5604#0      ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 208
consensus_5604#2      ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 240
consensus_5604#1      ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 102
                      ************************************************************

consensus_5604#0      GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 268
consensus_5604#2      GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 300
consensus_5604#1      GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 162
                      ************************************************************

consensus_5604#0      AAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 328
consensus_5604#2      AAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 360
consensus_5604#1      AAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 222
                      ********* **************************************************

consensus_5604#0      CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 388
consensus_5604#2      CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 420
consensus_5604#1      CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 282
                      ************************************************************

consensus_5604#0      ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 448
consensus_5604#2      ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 480
consensus_5604#1      ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 342
                      ************************************************************

consensus_5604#0      GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 508
consensus_5604#2      GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 540
consensus_5604#1      GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 402
                      ************************************************************

consensus_5604#0      TACGACAACAAGCG--TCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTG 566
consensus_5604#2      TACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTG 600
consensus_5604#1      TACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTG 462
                      **************  ********************************** *********

consensus_5604#0      CACTT-GGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGC 625
consensus_5604#2      CACTTTGGC--------------------------------------------------- 609
consensus_5604#1      CACTT-GGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGC 521
                      ***** ***                                                   

consensus_5604#0      GGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC---------------------------- 657
consensus_5604#2      ------------------------------------------------------------
consensus_5604#1      GGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACA 581
                                                                                  

consensus_5604#0      ------------------------------------------
consensus_5604#2      ------------------------------------------
consensus_5604#1      GTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT 623