These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1649 fasta sequence [ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCGCGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCACTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCAATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCTCGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCTAACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTGTTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATANAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAACTGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATAGTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAAAAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAATGCAGAGAATAAGAGGAAAAAAAAACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC-CGGATAGAGGGTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTG-AAAGG-AAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGTGTAAGGTGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGGAACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTCTGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGTCCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTACAAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTGGACAGAACTTCACACTACCATCCCTACCCTATTTGT] [+] EMBL BX620565 [ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCGCGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCACTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCAATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCTCGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCTAACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTGTTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATANAAGGGAG ] [+] EMBL BM647377 [ ccGAGCGTGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTTGTGTGTTCGCGTGTGTGTGTGTATGTTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTACCAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATAGAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAACTGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATAGTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAAAAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAATGCAGAGAATAAGAGGAAAAAAAAACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC CGGATAGAGGGTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTG AAAGG AAACTG ] [+] EMBL BM606284 [ ccgATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCA AGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGTGTAAGGTGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGGAACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTCTGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGTCCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTACAAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTGGACAGAACTTCACACTACCATCCCTACCCTATTTGT] consensusID : consensus_5616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGCAAAGGGCAGACAAACAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATAAGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCAAGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC] [+] EMBL BM586905 [CCGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACAGACAGAGCAAAGGGCAGACAAACAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATAAGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTATGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGGGTTTACAGCAAGGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAGCTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATGCACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCAAACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGGAGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5616#0 ATAAGTGTGCAGGGGCAAGGCTAAACTCTAATTCGTACACATAGCGCATAGCGGCTGTCG 60 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CGGCAACGAAGCTTTAGAGCCAATGTGACCAGAAACGATGTAGNAGAATACACAAATCCA 120 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CTTTGTAAAAATGGGAAGAAATACTCTCCCTTCCGTAAACCCCCCCTTTCAACTGGATCA 180 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 ATTTAGTTGGGATGGGATGAAGAAGCTTNAGGAGATTAGTGTGTGTTTGTGCTACTATCT 240 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CGCAGCTTCTCCTACTACCTACTACTACTACTACCACTATTATACTAGGAAGCGGAACCT 300 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 AACAACTATCGCTCTTACTGCAGCAACCACAACTACTTCGGTTGCTACGATCACTGTGTG 360 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TTGTGTTAGAATAGTTCACGTGTTTCGATGTGCATGGATGTGTCTTTTACTGTGTGAGCG 420 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TGTGTGTGTGTGAGTGTCTCCTTTTGTGTCCTTTCGTGTGGTCGCGTATGTGTGTGTATG 480 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TTCACAGCAGAAGTAGTAGAACACGCCACAACACGGAGGCAAAAGGAATACCCACAGTAC 540 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CAATTAATGTCAACCACAAAGTAATGTAGCAGAAGCGTTTGTGTTTAATATAGTGCAATA 600 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 NAAGGGAGGGTTTCGTTGCGGGAAAGAATCAAGGGCCGAGTGGTAGAAAGAACCCAAAAC 660 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TGGCATTCAACCATGGGAAACAATTTTACACGAGCGTATAGTCACGAGTAGTCAGCAATA 720 consensus_5616#1 -------------CCGGGAACAGTTCCATGC-------TGTTAAAGGGGGGGCACTTGCA 40 ** **** ** * * * * * * * * ** * consensus_5616#0 GTCAGCAAAAAAAAGGCAAATTACACTTCACAGGAGCTTAGAGGATAGAAAAAAAAGCAA 780 consensus_5616#1 TTCGGTGCAAACA---TGAAACAGAC------AGAGC--AAAGGGCAGACAAA----CAA 85 ** * *** * ** * ** **** * *** *** *** *** consensus_5616#0 AAGGGAACAGTTCCATGCTGTTAAAGGGGGGGCACTTGCATTCGGTGCAAACATGAAACA 840 consensus_5616#1 AAAAAATCATTTGAATGTACTACAAAGAGGATTATTTAGACCTC-TTCAGTCAC-AAACA 143 ** * ** ** *** * ** * ** * ** * * ** ** ***** consensus_5616#0 GACAGAGTAAAGGGCACACAAACAAAAACAATCATTTGAATGTACTACAAAGAGGATTAT 900 consensus_5616#1 GACT---TCGGTAGTGCATAATAAAAAAAAATCATTTGAATGTACTACAAAGAGGATTAT 200 *** * * ** ** ***** ******************************* consensus_5616#0 TTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAGTAAAAAA-TGCAGAGAATA 959 consensus_5616#1 TTAGACCTCTTCAGTCACAAACAGACTTCGGTAGTGCATAATAAAAAAATGCAGAAAATA 260 **************************************** ******* ****** **** consensus_5616#0 AGAGGAAAAAAAA-ACACACACACATACACACATACAAACAAACGAAACAGGATAGTTTA 1018 consensus_5616#1 AGAGGAAAAAAAACACACATACACATACACACATACAAACAAACGAAACAGGATAGTTTA 320 ************* ***** **************************************** consensus_5616#0 TGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCC-CGGATAGAGG 1077 consensus_5616#1 TGAAACTATACCTAAATGTATGCTATCAATGGTGTAAAAACCCAACCCCACGGATAGAGG 380 ************************************************* ********** consensus_5616#0 GTTTACAGGAGCGGAGCGAAGCTGAAGAAAGAAGCTGAAAGG--AAACTGGAAAACGAAG 1135 consensus_5616#1 GTTTACAGCAA-GGAGCGAAGCTGAAGAAAGAAGCTGAAAAGGAAAACTGGAAAACGAAG 439 ******** * **************************** * **************** consensus_5616#0 CTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATG 1195 consensus_5616#1 CTAGTAAAAAAAGAAAAGAGAAAAAGATAGTGTCTTGTCGTACAGGAAAAGGTAATTATG 499 ************************************************************ consensus_5616#0 CACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCA 1255 consensus_5616#1 CACAGAGTAAGCAACCAACGCGAGAAAATGGCACTTTTACGTACACAATTTGTAAAACCA 559 ************************************************************ consensus_5616#0 AACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGG 1315 consensus_5616#1 AACAGAAAACAAAACGTTTATATATATATATATTTTTGTACTGTACATATATTGTAGAGG 619 ************************************************************ consensus_5616#0 AGATGTAAGGTG-TGTAAGG-TGGGGACAGTGTTGCAAACAGGAGGGAGAGTGGAAATGG 1373 consensus_5616#1 AGATGTAAGGTGGTGTAAGGGTGGGGACAGTGTTGCAAACAGGGAGGGC----------- 668 ************ ******* ********************** ** consensus_5616#0 AACAGCGCAATCAGTCAGAGAAGGGAGCAATGGAATGGAATGTGTGCGTGTGCGTATGTC 1433 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TGTGTGTGTATTTATCATTTTTAATAGATTAGGAAGAGGTAGGTAATTTTTACTATCTGT 1493 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CCTCTTCCCACAGACAGAAGACGCAAAGTGAAGGCCAGAGACATGAAACGAAACAGTTAC 1553 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 AAAGAAAACTAGAAACGTTTACACAACGAATGTGTCTTGCGTGCGTGCGTGTGTGTGTTG 1613 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 GACAGAACTTCACACTACCATCCCTACCCTATTTGT 1649 consensus_5616#1 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Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||