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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[AGGCAGAATCGCGCACGAGGGAAGCAACGCTAAAATAAAAGTTTTTAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTTGTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCACTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTTCTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTCCAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTTTCTAGTTAGCTCAAAAACTAAACATCTCGCTTAAAACGGAACTGTTCATCTAACGATCACTGATCGTGTGTCTATTGCAAAGAGCAGACAGCACTAAACATCACTGCAAGTTATATATTACAGAAGAAGAAGGAAAAAAACCATTATAACAAAATGAACAATTAACCCTTTGTCCGTTCGAACACCATCCGGGTAAAGGTACGGAAAAAAAGGGCGAGCACCAGGANAAGGACAACACGAAGTTCCCCAAAAGGGGGGGTCCCCAAAAACGGGGAGTTTGAGGCCGGTGACACATTCACGAGCATTTCCTAGGTTGGGGGAATTTTTCACTTTGGACNNTTTCCCTTGGGGGGGCCATTTGGGGGGAAAAAGGAAAAAACACCCACTTTTANCCACNACCCAAAACGGGCCCACCCNGTTTTTGTGCACACCCATTTTTTCGGAACCCACAAAACCCACAATTCTGTTGCTCTTAAACACCCAGCAACCGTTTCACCTCTCTTTTAAAANGGCCCCGCAAACCCTTTATAAGCCCCCNGAGAGGGGAAAACACCCCACA]
[+] EMBL BX467340 [AGGCAGAATCGCGCACGAGGGAAGCAACGCTAAAATAAAAGTTTTTAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTTGTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCACTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTTCTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTCCAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTTTCTAGTTAGCTCAAAAACTAAACATCTCGCTTAAAACGGAACTGTTCATCTAACGATCACTGATCGTGTGTCTATTGCAAAGAGCAGACAGCACTAAACATCACTGCAAGTTATATATTACAGAAGAAGAAGGAAAAAAACCATTATAACAAAATGAACAATTAACCCTTTGTCCGTTCGAACACCATCCGGGTAAAGGTACGGAAAAAAAGGGCGAGCACCAGGANAAGGACAACACGAAGTTCCCCAAAAGGGGGGGTCCCCAAAAACGGGGAGTTTGAGGCCGGTGACACATTCACGAGCATTTCCTAGGTTGGGGGAATTTTTCACTTTGGACNNTTTCCCTTGGGGGGGCCATTTGGGGGGAAAAAGGAAAAAACACCCACTTTTANCCACNACCCAAAACGGGCCCACCCNGTTTTTGTGCACACCCATTTTTTCGGAACCCACAAAACCCACAATTCTGTTGCTCTTAAACACCCAGCAACCGTTTCACCTCTCTTTTAAAANGGCCCCGCAAACCCTTTATAAGCCCCCNGAGAGGGGAAAACACCCCACA]
consensusID : consensus_5619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 901 fasta sequence
[TTCAATCATCGCCACCAAAACAACAAGACGAGGATAGAGAAACAAAAGCCGAAAAGGGGAAGGAAAAATACATTACTCAAAACTCTACTGTGTTACGCGATCTGAGAAGAGAAGAATGTTTTGTCTACTACCAATTTTACTGCTATTAAAAGAAAAGGGCGAAGAAGCAAACGCTAAAATAAAAGTTTTTAAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTTGTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCACTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTTCTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTCCAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTTTCTAGTTAGCTCAAAAACTAAACATCTCGCTAAAAACGGAACTGTTCATCTAACGATCACTGATCGTGTGTCTATTGCAAAGAGCAGTCAGCACTAAACATCACTGCAAGTTATATATTTAAGAAGAAGAAGAAAAAAACATTATAACAAAATGAAAATAAACCCTTGTCCGTTCGAACACCATCCGGTAAGGTACGAAAAGCACACAGAAAGAAAAGAGTCCCAAAGGGGTCCCAAAACGGATGAGCGTGAAATAAAATTCTAGTGGGAATTTAATGACATTCTTGGGCATTGGGAAGAAACATAACACACGCACGTCGCACATTGAACAACAATGTGTAAACAAATTATGTAAGCAAAC]
[+] EMBL BX616497 [TTCAATCATCGCCACCAAAACAACAAGACGAGGATAGAGAAACAAAAGCCGAAAAGGGGAAGGAAAAATACATTACTCAAAACTCTACTGTGTTACGCGATCTGAGAAGAGAAGAATGTTTTGTCTACTACCAATTTTACTGCTATTAAAAGAAAAGGGCGAAGAAGCAAACGCTAAAATAAAAGTTTTTAAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTTGTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCACTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTTCTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTCCAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTTTCTAGTTAGCTCAAAAACTAAACATCTCGCTAAAAACGGAACTGTTCATCTAACGATCACTGATCGTGTGTCTATTGCAAAGAGCAGTCAGCACTAAACATCACTGCAAGTTATATATTTAA ]
[+] EMBL BM653975 [ ccgACAAGACGAGGATAGAGAAACAAAAGCCGAAAAGGGGAAGGAAAAATACATTACTCAAAACTCTACTGTGTTACGCGATCTGAGAAGAGAAGAATGTTTTGTCTACTACCAATTTTACTGCTATTAAAAGAAAAGGGCGAAGAAGCAAACGCTAAAATAAAAGTTTTTAAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTTGTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTA ]
[+] EMBL BX611855 [ TTGTTTCGTTACGCTGTCACACTTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTTGCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCACTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTTCTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTCCAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTTTCTAGTTAGCTCAAAAACTAAACATCTCGCTAAAAACGGAACTGTTCATCTAACGATCACTGATCGTGTGTCTATTGCAAAGAGCAGACAGCACTAAACATCACTGCAAGTTATATATTAAAGAAGAAGAAGAAAAAAACATTATAACAAAATGAAAATAAACCCTTGTCCGTTCGAACACCATCCGGTAAGGTACGAAAAGCACACAGAAAGAAAAGAGTCCCAAAGGGGTCCCAAAACGGATGAGCGTGAAATAAAATTCTAGTGGGAATTTAATGACATTCTTGGGCATTGGGAAGAAACATAACACACGCACGTCGCACATTGAACAACAATGTGTAAACAAATTATGTAAGCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5619#0 ------------------------------------------------------------
consensus_5619#1 TTCAATCATCGCCACCAAAACAACAAGACGAGGATAGAGAAACAAAAGCCGAAAAGGGGA 60
consensus_5619#0 ------------------------------------------------------------
consensus_5619#1 AGGAAAAATACATTACTCAAAACTCTACTGTGTTACGCGATCTGAGAAGAGAAGAATGTT 120
consensus_5619#0 ------------------------AGGCAGAATCGCGCACGAGGGAAGCAACGCTAAAAT 36
consensus_5619#1 TTGTCTACTACCAATTTTACTGCTATTAAAAGAAAAGGGCGAAGAAGCAAACGCTAAAAT 180
* * * * *** * * ***********
consensus_5619#0 AAAAGTTTTTAAA-TCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTT 95
consensus_5619#1 AAAAGTTTTTAAAATCTGTTCTCCTATTCTAAAACTGAACTCTCTTCAACTTTTCGTGTT 240
************* **********************************************
consensus_5619#0 GTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTT 155
consensus_5619#1 GTTTCGTTACGCTGTCACACCTTTTGCGTTCCGTACTGATATCAAGTTGTCTTTTGTTTT 300
************************************************************
consensus_5619#0 GCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCA 215
consensus_5619#1 GCTTTCTTTGTTTTTCCTTCTTGCTTGTTCTGTTTCTCCTATCTACTTGGCTCTCTACCA 360
************************************************************
consensus_5619#0 CTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTT 275
consensus_5619#1 CTTTCCGTGTCTTGTTTGTTGTCTGTGGCTATCCTTTTCTCGTTCTCTGTTGTGCACTTT 420
************************************************************
consensus_5619#0 CTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTC 335
consensus_5619#1 CTATCTCATCCTCAATTGTCCTTCCTACAAGGAACGTATAAGGCTGTTTTGTAGATCCTC 480
************************************************************
consensus_5619#0 CAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTT 395
consensus_5619#1 CAGCATCGTTGTCTTTTTCTGAGAACTGAGTGGGGAATAAAAGCAAAAAATTAAGCATTT 540
************************************************************
consensus_5619#0 TCTAGTTAGCTCAAAAACTAAACATCTCGCTTAAAACGGAACTGTTCATCTAACGATCAC 455
consensus_5619#1 TCTAGTTAGCTCAAAAACTAAACATCTCGCTAAAAACGGAACTGTTCATCTAACGATCAC 600
******************************* ****************************
consensus_5619#0 TGATCGTGTGTCTATTGCAAAGAGCAGACAGCACTAAACATCACTGCAAGTTATATATTA 515
consensus_5619#1 TGATCGTGTGTCTATTGCAAAGAGCAGTCAGCACTAAACATCACTGCAAGTTATATATTT 660
*************************** *******************************
consensus_5619#0 CAGAAGAAGAAGGAAAAAAACCATTATAACAAAATGAACAATTAACCCTTTGTCCGTTCG 575
consensus_5619#1 AAGAAGAAGAAGAAAAAAA--CATTATAACAAAATGA--AAATAAACCCTTGTCCGTTCG 716
*********** ****** **************** ** *** ** ***********
consensus_5619#0 AACACCATCCGGGTAAAGGTACGGAAAAAAAGGGCGAGCACCAGGANAAGGACAACACGA 635
consensus_5619#1 AACACCATCCGGT--AAGGTACGAAAA------GCACACAGAAAGAAAAGAGTCCCAAAG 768
************ ******** *** ** ** * ** *** **
consensus_5619#0 AGTTCCCCAAAAGGGGGGGTCCCCAAAAACGGGGAGTTTGAGGCCGGTGACACATTCACG 695
consensus_5619#1 GGGTCCCAAAACGGATGAG----------CGTGAAATAAAATTCTAGTGGGAATTTAATG 818
* **** *** ** * * ** * * * * * *** * ** * *
consensus_5619#0 AGCATTTCCTAGGTTGGGGGAATTTTTCACTTTGGACNNTTTCCCTTGGGGGGGCCATTT 755
consensus_5619#1 ACATTCTTGGGCATTGGGAAGAAACATAACACACGCACGTCGCACATTGAACAACAATGT 878
* * * ***** * * ** * * * * * * * ** *
consensus_5619#0 GGGGGGAAAA-AGGAAAAAACACCCACTTTTANCCACNACCCAAAACGGGCCCACCCNGT 814
consensus_5619#1 GTAAACAAATTATGTAAGCAAAC------------------------------------- 901
* *** * * ** * **
consensus_5619#0 TTTTGTGCACACCCATTTTTTCGGAACCCACAAAACCCACAATTCTGTTGCTCTTAAACA 874
consensus_5619#1 ------------------------------------------------------------
consensus_5619#0 CCCAGCAACCGTTTCACCTCTCTTTTAAAANGGCCCCGCAAACCCTTTATAAGCCCCCNG 934
consensus_5619#1 ------------------------------------------------------------
consensus_5619#0 AGAGGGGAAAACACCCCACA 954
consensus_5619#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||