These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1681 fasta sequence [CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACATATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAAGTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAAATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTGAAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGCTAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGACAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGGTGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGTTGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAGCTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACCGGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTTGGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGCGGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCCGCTCGCGTCGACCATTAACGACTGGCCGGCGCCG-CGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGTGGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTG-T--TGTTGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTG-T-CTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGT---TGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTG---------CTGCTGCTG-TGC---GCTTGCTGCTGCTGTTG-TGCGCCTG-TGCGCCTGC---TGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAATAATCTGACTGAGGCTG] [+] EMBL CNS09ENE [CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACATATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAAGTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAAATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTGAAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGCTAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGACAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGGTGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGTTGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAGCTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACCGGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTTGGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGCGGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCCGCTCGCGTCGACCATTAACGACTGGCCGGCGCCG CGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTT ] [-] EMBL CNS09END [ CGACCATTAACGACTGGGCCGCGCCGCCGCCGCCACCGCCACCGGACTGTGGTTGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGTGGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTG T TGTTGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTG T CTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGT TGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTG CTGCTGCTG TGC GCTTGCTGCTGCTGTTG TGCGCCTG TGCGCCTGC TGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAATAATCTGACTGAGGCTG] [-] EMBL BM587328 [ CGATTGTTGCTGCTGCTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTAGCTGACCAGCCGCCGCGACAAATGCGGATGCTTGTGCTGCTGCTGCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCCTGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAACTGTTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGTGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGTTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCAGCACTACTGCTATTCGCGGCGGCGACAACGGCTGCgg ] consensusID : consensus_5624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [CTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG] [-] EMBL BM613903 [CTGCTGTTGCTGCTGCATTAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTCTTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTGCTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGGAGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGTACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAGCATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTGCTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGTCGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGGTAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5624#0 CAGAACAGGTTATAGTTTTTATTGATCAATTTTTTTCGCTTCATTTTGTTTTTTTCCACA 60 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TATTTTTTAAAAAAGGAGTTCCGTAATCTGTAAAGATCAATTCAGGTCCCTGTCTTCTAA 120 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GTACTTGTATTCAAACGTAAACCCTTCCTTTTTACGCTGGCCCCATTTTTCATAGTCAAA 180 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 ATAGATGTAGGTTCCCTGCTCGTATTCTTCGTTGATCACTTTCGGTTCTTCGTGGCGTTG 240 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 AAACCACATCATATATTTCGTATGAAATCTCCAGCTCTGCTTTTTCAGCGCCTTCGCGGC 300 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TAGATATTGAGCCTTCGTTCCCTCCATGTAGTAAAACACGAAGAAGAGCGTTTCGGGTGA 360 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 CAGACGCTGGAAAAACTCAACCGTTTCAGAATGTGGAAGTTGTTGCTGTGGATAGTGCGG 420 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TGGAGTTTGAACAGGTTGACGTTGCAAGTACGGCCTTAGCCTCTCTGAATCGCTTGGTGT 480 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TGGCAGATGATAGTAGGCGGCTTCCATGAGTTGGAATTGTATTTGATGCTCCTTCTGCAG 540 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 CTTGGACGTGCCCAGCGGTGCCACGCCGAGTAGCGGCGGTATGCAGGCCTCGTGCGTACC 600 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GGCCGACGGCTTCATGCCTCCGGGGCCGCCGCCGCCACCGCCACCAGCACTGTTCACGTT 660 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GGCGGCGTTCGAAATACTAGAGTTAGTGTTGATGATCGTGTTCGGTCCGTTCGTGATGGC 720 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GGCAGTAGCCGATGACGTCGGCAACAGGTTGTTGCCCGCGTTGGCTCCCGCCGGCACGCC 780 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GCTCGCGTCGACCATTAACGACTGGCCGGCGCCGCGCCGCCACCGCCACCGGACTGTGGT 840 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TGGGGTGTTTGATTCGAAGGAACTGGCCCAGCCTGTCTCGAATCTGCTGGCTGTGGTTGT 900 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GGTTGCTGCTGTTGCGATTGTTGCTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTGTTGT 960 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TGCTGCTGCTGCTGTAGCTGATCAGCTGCCGCGACAAATGCGGATGCTTGTGCTGCTGCT 1020 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 GCTGCAGCTGCAGCTTGTTGCGCAGTGGTGGCTGCGGCTGCCGCGACCGCCGCTGCACCC 1080 consensus_5624#1 ------------------------------------------------------------ consensus_5624#0 TGGGTATTCGACGATTGTTGCTGTTGGCTCTGCTGCTGCTGCTGTCTGTTGCTGCTGCAT 1140 consensus_5624#1 -----------------------------------------CTG-CTGTTGCTGCTGCAT 18 *** *************** consensus_5624#0 TAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTC 1200 consensus_5624#1 TAACGCGTTCGGGTTGGCGGTTGGGCCCGTTTCGAGAACTCCCGTTCTATTTATCACTTC 78 ************************************************************ consensus_5624#0 TTGCGCGAGTGCTGTGGGACCGTTCAACAACTGTTGCTGCTGCTGCTGCTGTTGCTGTTG 1260 consensus_5624#1 TTGCGCGAGTGCTGTGGGACCGTTCAACAGCTGTTGCTGCTGCTGTTGCTG--------- 129 ***************************** *************** ***** consensus_5624#0 CTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGG 1320 consensus_5624#1 CTGCTGCGGAGGTGACATCAAGCTAGGTGACGCTCTGCTACTGACTGCGGAATTGCTGGG 189 ************************************************************ consensus_5624#0 AGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGT 1380 consensus_5624#1 AGAGACACAGTTATTAATAACGTTCGCCCCGCTACTACTGATGGTAGACGCGGACGATGT 249 ************************************************************ consensus_5624#0 ACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAG 1440 consensus_5624#1 ACTCATTACATGATTGTTGCTCTCCGTACTCGATGCCGACGACAGGGCATTGTGAAGTAG 309 ************************************************************ consensus_5624#0 CATGGAATTCTGACCGGGAGGAATCTGCTGCTG---CTG----------TGCGCTTGCTG 1487 consensus_5624#1 CATGGAATTCTGACCGGGAGGAATCTGCTGCTGGGCCTGCTGCTGCTGCTGCGCTTGCTG 369 ********************************* *** *********** consensus_5624#0 CTGCTGTTG-TGCGCCTG-TGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGT 1545 consensus_5624#1 CTGCTGTTGCTGCGCCTGCTGCGCCTGCTGCTGCTGTTGTGAAGATGCGTTCGACTGTGT 429 ********* ******** ***************************************** consensus_5624#0 CGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGG 1605 consensus_5624#1 CGAAGACGGCACACCACCACTACTGCTATTCGCGGCGGCGACAACGGCTGCAGCACTCGG 489 ************************************************************ consensus_5624#0 TAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGATGTATTAAT 1665 consensus_5624#1 TAGACTACTCGGCGTTTGCTGCTGCTGCTGCTGACTAAGCTTAGTTTGAGCGG------- 542 ************************************************** * consensus_5624#0 AATCTGACTGAGGCTG 1681 consensus_5624#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||