These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence [CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAACAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC] [+] EMBL BM629236 [CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCT ] [+] EMBL BM602874 [ ccgGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGAC ] [+] EMBL BM629483 [ ccgGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAACAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC] consensusID : consensus_5625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT] [+] EMBL BM587358 [CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5625#0 CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGA 60 consensus_5625#1 ---CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGA 57 * ** * * ********************************************* consensus_5625#0 ATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCAT 120 consensus_5625#1 ATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTAT 117 ********************************************************* ** consensus_5625#0 CGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTG 180 consensus_5625#1 CGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTG 177 ************************************************************ consensus_5625#0 AAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTG 240 consensus_5625#1 AAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTG 237 ************************************************************ consensus_5625#0 CAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACAT 300 consensus_5625#1 CAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACAT 297 *********** ************************************************ consensus_5625#0 TGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTA 360 consensus_5625#1 TGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTA 357 ************************************************************ consensus_5625#0 TTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCA 420 consensus_5625#1 TTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCA 417 ************************************************************ consensus_5625#0 TATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTG 480 consensus_5625#1 TATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT- 476 *********************************************************** consensus_5625#0 CAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTT 540 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 CTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGG 600 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 GAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAA 660 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 CAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC 708 consensus_5625#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||