|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1111 fasta sequence
[GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC-AACTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG]
[+] EMBL BX627408 [GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTTCTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTACATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCCTGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGAACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGCAAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGC AACTCAGCCTCCTGTACACGCTCCCGGTCT ]
[+] EMBL BX618012 [ CGAGCGGACGTAGGTTCATTGCTCAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCATTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCATAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCACATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAAGTTTCCGAGTTGCTGCATCTCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGC ]
[+] EMBL BX611109 [ TATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACG TTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCT CCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGTGGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAAAGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTACCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG]
consensusID : consensus_5626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT]
[+] EMBL BX620273 [TTAACAACATACCCTAGCCCGAATCGTGCACGTTCATCGTAATGCTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTAAGATATTGCACATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTGGTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACGTCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTAAGCAAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAACTCAGCCTCCTGTACACGCTCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTCCTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTAATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTACGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACGCGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5626#0 GAAAGAACTTATTGTAAGCTCATCGGCGTAACTGACGCAAACAAATCGTACAAGTTGTTT 60
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 CTTTCAAACGGCTTCTTCCTGTTGCCCCCGCTGGTCTACAAGGCATTAAGTGAAAGTTAC 120
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 ATAACTTTTAAGCCATGTTAAATCAATACAGTTTGACGAGAGCAGGCATCATTCATCTCC 180
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 TGGCTCAATGTTCACGCAAGTCACCTTTAAAGGCCTCTTTACACTATGCAATAGAGCGGA 240
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 ACAGATGGTGCTAGCGATAAACGCGTCGTGTCTTACACGAGCGGACGTAGGTTCATTGCT 300
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 CAACCAGGGCCCGGCGCCTCCTCTTCGTAACAAGGATAGACTTAAAAAAACACGTTACCA 360
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 TTTTCGTACCCTGCTGCACATGATATTTCATCTACGTTGTTTTACTAAGACAATCTGCCA 420
consensus_5626#1 --------------TTAACAACATACCCTAGCCCGAATCGTGCAC-------GTTCATCG 39
* *** *** * * * * ** * *
consensus_5626#0 TAAAGTCCTTTCCCGCAATGTGTGGTTCTATCTTTCTGTTTCATATTTACAGATATTGCA 480
consensus_5626#1 TAATG--CTTCTGCGAAAACCATTCATTTGCCTTCCACATGCCAAATTA-AGATATTGCA 96
*** * *** ** ** * * * *** * * * * *** **********
consensus_5626#0 CATTTCCATTCGCATGGGGTTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 540
consensus_5626#1 CATTTCCATTCGCATGGGGNTTATAAGCTGATAATCATACCGTTCCCGCTTACTGCCCTG 156
******************* ****************************************
consensus_5626#0 GTCCCAACACAATGCTGAAGAANGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 600
consensus_5626#1 GTCCCAACACAATGCTGAAGAAGGTTTCCGAGTTGCTGCATCCCGCACTGCTGGCAAACG 216
********************** *************************************
consensus_5626#0 TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTTTAAGC 660
consensus_5626#1 TCAAGCAGCAGCAGCAAGTCGTCGCCCGCTTTCAAGCGCTTCCGAAGCTACGTTT-AAGC 275
******************************************************* ****
consensus_5626#0 AAGGAACCGGNCNAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAA- 719
consensus_5626#1 AAGGAACCGGCCAAGAAGGAAGCGGCGATCCTGATTCCGCTCTGTCTGGTCGACGGCAAA 335
********** * **********************************************
consensus_5626#0 CTCAGCCTCCTGTACACGCTCCCGGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 779
consensus_5626#1 CTCAGCCTCCTGTACACGCTCC-GGTCTAACAAGTTGCGAAACCACCGCGGCCAGGTTTC 394
********************** *************************************
consensus_5626#0 CTTTCCCGG--------------------------------------------------- 788
consensus_5626#1 CTTTCCCGGTTGGTGCACGGTTCAGGCCGAGCTGCCCGCGAGTTGTCCTGTTTTACGCTA 454
*********
consensus_5626#0 ------------------------------CGGCATGAAGGATGCGCGCGATGCCAGCTA 818
consensus_5626#1 ATACTAAACGCATCCTCCTCGTTACACAGGCGGCATGAAGGATGCGCGCGATGCCAGCTA 514
******************************
consensus_5626#0 CGAAACCTGTGCGGTGCGTGAGTTTGTGGAGGAAACCGGCCTGCCGAGCGAGTCGGTACG 878
consensus_5626#1 CGAAACCTGTGCGGTGCGTGAGTTTGTGGANGAAACCGGCCTGCCGAGCGAGTCGGTACG 574
****************************** *****************************
consensus_5626#0 CGTTTGGGGCCGAGGCAATACCATCATTCCATACTTTGGCCCGTCGATCACGCCGATCGT 938
consensus_5626#1 CGTTTGGGGNCGAGGCAATACCATCATTCCATACTTTGGNCCGTCGAT------------ 622
********* ***************************** ********
consensus_5626#0 GGGCCACGTCACGGACTTTGCCCCGGGCCAGCTGCGGCTGAGCACGGACGAGGTGGCCAA 998
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 AGTGTTTACCGTGCCGGTGGAGCTGTTTGCCAGTGCGGCAAACCGGCGACACACGCAGTA 1058
consensus_5626#1 ------------------------------------------------------------
consensus_5626#0 CCGGGCCAACTACACCATGCCGGTGTTTGTGAACGGAGACGAGACCGTCTGGG 1111
consensus_5626#1 -----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||