These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence [CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA] [+] EMBL BM607901 [CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCA ] [+] EMBL BX603706 [ TGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAAGCTGTACCGGCCCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA] consensusID : consensus_5639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC] [+] EMBL BM588321 [CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC] consensusID : consensus_5639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC] [+] EMBL BM605179 [CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5639#1 ----------------CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGC 44 consensus_5639#2 ------------------------------------------------------------ consensus_5639#0 CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGC 60 consensus_5639#1 AGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC 104 consensus_5639#2 -------CCGAAAATGTC--CAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATC 51 consensus_5639#0 AGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGC 120 * * * ** * * ** ***** * ** ** ****** * consensus_5639#1 AACAACAATTGCAGCAGCATCAACAGCAACA----AATGCAGCAGATGCATC-AAGAAAA 159 consensus_5639#2 AAATGCAACAATTACAACATCAGCAGGAGCA----TCAGCAGCAAATATCGC-AACAA-- 104 consensus_5639#0 AAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAAC 180 ** ** * **** * * * ** * * * ** * consensus_5639#1 TGCACTTGCTCAACAAAAACAGCAGCATCAGGTG-CAGCAATCACAACATGTCCAGGAAA 218 consensus_5639#2 ----------CAGCAACAACCACAACAGCAGCCA-CAGCCGCCGCAACAG---CCAGAAC 150 consensus_5639#0 AACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATA 240 ** ** ** * * **** ** ** * consensus_5639#1 ATCA-ACAGCATCTGCAGCACATGCAACAG--------CATCAAATGCAACAATTACAAC 269 consensus_5639#2 CTCA-ACTGCATCAACAGCA---GCAACAG--------CAACAGCAGCAACAACAGCAAC 198 consensus_5639#0 ATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAA 300 *** * * * * * **** ** ** *** * ** consensus_5639#1 ATCAGCAGGAGCATCAGCAGCAAATATCG--CAACAACAGCAACAACCACAACAGCAGCC 327 consensus_5639#2 AGCAACAGCAACAGCAACAGCAACAGCTA--CAGCAGCAGCAACAGCAACAGCAGCAGCA 256 consensus_5639#0 AGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCA-AGCAACGATT 359 * ** ** * * * ** * * ******* * * * ** * consensus_5639#1 AC-AGCCGCCGCAACAGGCAGAACCTCAGC-TGCAGCAACAGCAACAACAGCAACAGCAG 385 consensus_5639#2 GC-AGCAGCAACAGCAGCAGCAGCAACAGC-AACAACAGCAGCAACAACAGCAGATGCAG 314 consensus_5639#0 ACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGC 419 * *** ** * ** * * * ** * * * ** consensus_5639#1 CAACAGCAACAGCAACAGCAGCAACAGCA---GCAACAGCAACAACAGC---AGCAACAG 439 consensus_5639#2 CAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGC---AGCAGCAG 371 consensus_5639#0 CAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAA 479 ** * * * ** **** ** *** * *** * * * * * * * * consensus_5639#1 AATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAAC-- 497 consensus_5639#2 CAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAAC-- 429 consensus_5639#0 AAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGT 539 * * * * * *** * * ** * * * * * * ** * * consensus_5639#1 --AGCAACAGCAA--CAGCAACAGCAGCAACAACAGCAGCAACAA-CAGCAGCAACAACA 552 consensus_5639#2 --AACAACAACAA--CAACAACATCTGCAGCAACAGCAGCAGCAC-CAGCAACAACAAAC 484 consensus_5639#0 GAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCT 599 * * * ** ** * ** * ** ** ** ***** * * ** * * consensus_5639#1 GCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCC-GCAA--------CAACA 603 consensus_5639#2 ACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGA--GCAT--------TGCCA 534 consensus_5639#0 GTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCG 659 * ** * * * * * * * * *** * consensus_5639#1 -ACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCA---ACAA-CAA 658 consensus_5639#2 TAGAAGCGTCGAACCAACAACAGTC-CGGCAATAACAAAAAGCAAAGTA---ATAAGCAG 590 consensus_5639#0 GAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAA 719 * * * * * * * ** * * ** consensus_5639#1 CAACATCTGCAGCAACAGCAGCAGCAC-CAGCAAC------------------------- 692 consensus_5639#2 CACCACCAGCAGCACGTAAATAATCACGTAGAAAC------------------------- 625 consensus_5639#0 CAGGAACAGCAGCAGATGCTGGAG-ATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTG 778 ** * * ****** * * * * consensus_5639#1 ------------------------------------------------------------ consensus_5639#2 ------------------------------------------------------------ consensus_5639#0 GAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGA 838 consensus_5639#1 -------------------------------- consensus_5639#2 -------------------------------- consensus_5639#0 GGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA 870 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||