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Anopheles gambiae
cluster # 5639 cluster # 5639       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5639#0 length = 870 sequences # 2  
consensus_5639#1 length = 692 sequences # 1  
consensus_5639#2 length = 625 sequences # 1  

consensusID : consensus_5639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 870
fasta sequence
                              [CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA]

[+] EMBL BM607901             [CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCA                                                                                                                                                                                                                                 ]
[+] EMBL BX603706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAAGCTGTACCGGCCCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA]


>consensus_5639#0 CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGC AGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGC AAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAAC AACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATA ATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAA AGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTA CCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCC AGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAA AGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTG AAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTG TACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGG AAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAAC AGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGA ACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGG CCGCTGCGGCTGAAAGGGCCCGCGAGAAGA



consensusID : consensus_5639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC]

[+] EMBL BM588321             [CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC]


>consensus_5639#1 CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCA GCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCA GCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACA GCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACAT GCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCA ACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCA GCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACA GCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCA ACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACA GCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACA ACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACA ACATCTGCAGCAACAGCAGCAGCACCAGCAAC



consensusID : consensus_5639#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC]

[+] EMBL BM605179             [CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC]


>consensus_5639#2 CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAAC AATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAAC AGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAAC AGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAAC AGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAAC AACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAAC TGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAAC AAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAG CGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGC AGCACGTAAATAATCACGTAGAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5639#1      ----------------CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGC 44
consensus_5639#2      ------------------------------------------------------------
consensus_5639#0      CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGC 60
                                                                                  

consensus_5639#1      AGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC 104
consensus_5639#2      -------CCGAAAATGTC--CAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATC 51
consensus_5639#0      AGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGC 120
                              *   *    *  **  *  * ** ***** *  ** **      ****** *

consensus_5639#1      AACAACAATTGCAGCAGCATCAACAGCAACA----AATGCAGCAGATGCATC-AAGAAAA 159
consensus_5639#2      AAATGCAACAATTACAACATCAGCAGGAGCA----TCAGCAGCAAATATCGC-AACAA-- 104
consensus_5639#0      AAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAAC 180
                      **   **        *  ****  *  *  *       **   * *     * **  *  

consensus_5639#1      TGCACTTGCTCAACAAAAACAGCAGCATCAGGTG-CAGCAATCACAACATGTCCAGGAAA 218
consensus_5639#2      ----------CAGCAACAACCACAACAGCAGCCA-CAGCCGCCGCAACAG---CCAGAAC 150
consensus_5639#0      AACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATA 240
                                **  ** **       *  *     ****     ** **        *  

consensus_5639#1      ATCA-ACAGCATCTGCAGCACATGCAACAG--------CATCAAATGCAACAATTACAAC 269
consensus_5639#2      CTCA-ACTGCATCAACAGCA---GCAACAG--------CAACAGCAGCAACAACAGCAAC 198
consensus_5639#0      ATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAA 300
                       ***    * * *    * *      ****        ** **    *** *     ** 

consensus_5639#1      ATCAGCAGGAGCATCAGCAGCAAATATCG--CAACAACAGCAACAACCACAACAGCAGCC 327
consensus_5639#2      AGCAACAGCAACAGCAACAGCAACAGCTA--CAGCAGCAGCAACAGCAACAGCAGCAGCA 256
consensus_5639#0      AGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCA-AGCAACGATT 359
                      * ** **  *  *  * ** * *              *******  * * * ** *    

consensus_5639#1      AC-AGCCGCCGCAACAGGCAGAACCTCAGC-TGCAGCAACAGCAACAACAGCAACAGCAG 385
consensus_5639#2      GC-AGCAGCAACAGCAGCAGCAGCAACAGC-AACAACAGCAGCAACAACAGCAGATGCAG 314
consensus_5639#0      ACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGC 419
                       * ***         **      *  ** *    *  *  **    *  *  *   **  

consensus_5639#1      CAACAGCAACAGCAACAGCAGCAACAGCA---GCAACAGCAACAACAGC---AGCAACAG 439
consensus_5639#2      CAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGC---AGCAGCAG 371
consensus_5639#0      CAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAA 479
                      **  *  *   * ** **** ** *** *   ***  * *   * * *    *  *  * 

consensus_5639#1      AATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAAC-- 497
consensus_5639#2      CAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAAC-- 429
consensus_5639#0      AAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGT 539
                       * *  * * *  ***   *    *   ** *   * * *  *   *    ** *  *  

consensus_5639#1      --AGCAACAGCAA--CAGCAACAGCAGCAACAACAGCAGCAACAA-CAGCAGCAACAACA 552
consensus_5639#2      --AACAACAACAA--CAACAACATCTGCAGCAACAGCAGCAGCAC-CAGCAACAACAAAC 484
consensus_5639#0      GAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCT 599
                        * * *    **  **  * ** *  ** ** ** ***** *   * **  * *     

consensus_5639#1      GCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCC-GCAA--------CAACA 603
consensus_5639#2      ACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGA--GCAT--------TGCCA 534
consensus_5639#0      GTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCG 659
                        *   **   *    *    *  *   *   *   * *    ***            * 

consensus_5639#1      -ACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCA---ACAA-CAA 658
consensus_5639#2      TAGAAGCGTCGAACCAACAACAGTC-CGGCAATAACAAAAAGCAAAGTA---ATAAGCAG 590
consensus_5639#0      GAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAA 719
                       * *        * *         *          *      *  ** *      * ** 

consensus_5639#1      CAACATCTGCAGCAACAGCAGCAGCAC-CAGCAAC------------------------- 692
consensus_5639#2      CACCACCAGCAGCACGTAAATAATCACGTAGAAAC------------------------- 625
consensus_5639#0      CAGGAACAGCAGCAGATGCTGGAG-ATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTG 778
                      **  * * ******        *  *   *    *                         

consensus_5639#1      ------------------------------------------------------------
consensus_5639#2      ------------------------------------------------------------
consensus_5639#0      GAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGA 838
                                                                                  

consensus_5639#1      --------------------------------
consensus_5639#2      --------------------------------
consensus_5639#0      GGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA 870
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)