These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1915 fasta sequence [TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTTCCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAATTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGACATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCACGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCAGCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAGCTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACCGCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGCCCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGCCGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCAGGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTACCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGACCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTTCCCTAATGCCTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGGAAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTTCGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGCGGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTACCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTTCGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCCCGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAATGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAACCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTTATGC] [+] EMBL CNS09MWX [TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTTCCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAATTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGACATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCACGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCAGCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAGCTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACCGCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGCCCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGCCGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCAGGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTACCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGACCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTT ] [-] EMBL BX606617 [ CGTTACGTTCGGTATGATGCGGCGCACTTCCTTAACTAGGTTTAGGTATGCTCCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTATTGCCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTCCCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGAGGTGACGTGAAACGGATCCTCATCTCGGGAACCGCTTCCGCCAGCTCTGTTAGCAGCTCGGCAAACCGTAATCCCCCGACCTTGCTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGGGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACGTTCTGCCCGAGCAACGTTATTTCCCTAATGCCTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCA ] [-] EMBL CNS09MWW [ GACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGGAAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTTCGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGCGGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTACCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTTCGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCCCGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAATGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAACCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTTATGC] consensusID : consensus_5644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCTCGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTACCTATTTTTCGTTAAATTAAACTTATTTTAACCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCTTTTGGTCGG] [-] EMBL BM588548 [CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCTCGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTACCTATTTTTCGTTAAATTAAACTTATTTTAACCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCTTTTGGTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5644#0 TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTT 60 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAA 120 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 TTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGA 180 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCA 240 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCA 300 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 GCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAG 360 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACC 420 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 GCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGC 480 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGC 540 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCA 600 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 GGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTAC 660 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCA 720 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 GCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGA 780 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGT 840 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 ACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATC 900 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTTCCCTAATGC 960 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCT 1020 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 TGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGG 1080 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 AAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTT 1140 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGC 1200 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 GGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTA 1260 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTT 1320 consensus_5644#1 ------------------------------------------------------------ consensus_5644#0 CGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACC 1380 consensus_5644#1 ---------------CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACC 45 ******************************************** consensus_5644#0 GTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTC 1440 consensus_5644#1 GTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTC 105 ************************************************************ consensus_5644#0 AGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCG 1500 consensus_5644#1 AGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCG 165 ******************* **************************************** consensus_5644#0 TTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGC 1560 consensus_5644#1 TTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGC 225 ***************************************** ****************** consensus_5644#0 GTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTT 1620 consensus_5644#1 GTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTT 285 ********************** ************************************* consensus_5644#0 TCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCC 1680 consensus_5644#1 TCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCT 345 **** ****************************************************** consensus_5644#0 CGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTT 1740 consensus_5644#1 CGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTT 405 ************************* ********* ************************ consensus_5644#0 CGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAA 1800 consensus_5644#1 CGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTA------------ 453 *********************************** ********* ** consensus_5644#0 TGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAA 1860 consensus_5644#1 -----------------------------CCTATTTTTCGTTAAATTAAACTTATTTTAA 484 ******* ******************** ** consensus_5644#0 CCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTT-ATGC---- 1915 consensus_5644#1 CCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCT 544 ***** ********* ********************************** **** consensus_5644#0 --------- consensus_5644#1 TTTGGTCGG 553 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||