These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGCCCACGCGTCCGACCGAAGGAAGGAGAACCGAGCGATAATACAGATATAGAAAAGCGTTTGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAGGATGCGTCGCATCGGTTCATGGCGCCGGACAATCGGACGGAGGCACAGAAGGTGCAGGACCTGCTGGGCCAGTTCGTGGAGGAAACCAAGCTAATCAGCGTGATGGACGACAAGCGTACCGAGCAGGATGAGGAGATAGCGAAGCGATTGCAAGCATTGAAGCAATTTCCAACAGCAGGTGATGGAACAGCAGCGACTGCGAGTGGCAACTCCAAGGCAACGATACTCCCGGACAGTGACTCGGACGAAGGCCTGACGGATGAGGAGTTGGCACGAAAGTTAGCCCAGCGGTACGCCGAGGAGGGTAAGCTGGAGGCGAAACTGAACCTGGAAAGTGAGCTGGAGGAGATTACACCAACACCGTCTTCGAACGTTGAGGAAGAGCTGCCTTGGTGTACGATCTGCAACGAGGATGCTGTTCTACGGTGTCGAGGATGTGATAACGATCTGTACTGCAGGGCGTGCTACAAAGAGTTCCACTACGACGAAGATCCGCAGGAGCATCCGACGGTACAGTTCAAGGGCGGAAAAGGGCCAACACGTGTTTAACACGTTTTTGTACG] [+] EMBL BM607510 [CCGCCCACGCGTCCGACCGAAGGAAGGAGAACCGAGCGATAATACAGATATAGAAAAGCGTTTGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAGGATGCGTCGCATCGGTTCATGGCGCCGGACAATCGGACGGAGGCACAGAAGGTGCAGGACCTGCTGGGCCAGTTCGTGGAGGAAACCAAGCTAATCAGCGTGATGGACGACAAGCGTACCGAGCAGGATGAGGAGATAGCGAAGCGATTGCAAGCATTGAAGCAATTTCCAACAGCAGGTGATGGAACAGCAGCGACTGCGAGTGGCAACTCCAAGGCAACGATACTCCCGGACAGTGACTCGGACGAAGGCCTGACGGATGAGGAGTTGGCACGAAAGTTAGCCCAGCGGTACGCCGAGGAGGGTAAGCTGGAGGCGAAACTGAACCTGGAAAGTGAGCTGGAGGAGATTACACCAACACCGTCTTCGAACGTTGAGGAAGAGCTGCCTTGGTGTACGATCTGCAACGAGGATGCTGTTCTACGGTGTCGAGGATGTGATAACGATCTGTACTGCAGGGCGTGCTACAAAGAGTTCCACTACGACGAAGATCCGCAGGAGCATCCGACGGTACAGTTCAAGGGCGGAAAAGGGCCAACACGTGTTTAACACGTTTTTGTACG] consensusID : consensus_5656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCCCACGCGTCCGGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCCATGAATTAAAACAGTTATTTTTTAACGTGCGCCAGTGAAAAAGATTGAAAACTGTAAAGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTGAGTCATCGTGCTCCGTCGGTCGGGGTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGATTTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGATGGCAAGAAGCTGAATGTTTGTTTGCGCTGTTCAGCGCTTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGAACCATCCAACGCCCAACGAAGACGCAGTACCGACGCAGAGCTCGAAAGAGCCGCCAAAGGAACCGGATGGAGATGAGCTAATACGTAGCAAGCTGCAGGCACTGAAGGCAATCGATTTGGGCGAGGAAGACGCACCGAAGGAAGGAGAACCGAGCGATAATACAGATATAGAAAAGCGTTTGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAG] [+] EMBL BM599578 [CCGCCCACGCGTCCGGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCCATGAATTAAAACAGTTATTTTTTAACGTGCGCCAGTGAAAAAGATTGAAAACTGTAAAGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTGAGTCATCGTGCTCCGTCGGTCGGGGTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGATTTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGATGGCAAGAAGCTGAATGTTTGTTTGCGCTGTTCAGCGCTTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGAACCATCCAACGCCCAACGAAGACGCAGTACCGACGCAGAGCTCGAAAGAGCCGCCAAAGGAACCGGATGGAGATGAGCTAATACGTAGCAAGCTGCAGGCACTGAAGGCAATCGATTTGGGCGAGGAAGACGCACCGAAGGAAGGAGAACCGAGCGATAATACAGATATAGAAAAGCGTTTGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAG] consensusID : consensus_5656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [CCGAACAAAACAAAGTCTGTCGCTGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCCATGAATTAAAACAGTTATTTTTTAACGTGCGCCAGTGAAAAAGATTGAAAACTGTAAAGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTGAGTCATCGTGCTCCGTCGGTCGGGGTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGATTTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGATGGCAAGAAGCTGAATGTTTGTTTGCGCTGTTCAGCGCTTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGA] [+] EMBL BM589983 [CCGAACAAAACAAAGTCTGTCGCTGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCCATGAATTAAAACAGTTATTTTTTAACGTGCGCCAGTGAAAAAGATTGAAAACTGTAAAGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTGAGTCATCGTGCTCCGTCGGTCGGGGTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGATTTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGATGGCAAGAAGCTGAATGTTTGTTTGCGCTGTTCAGCGCTTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGA] consensusID : consensus_5656#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AGGCAGAATCCCGCACGAGTGTAAAACTGTAAAGGGAACAATAANATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTTGAGTCATCGTGCTCCGTCGGTCGGGGCTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGAGTATTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTCTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGACTGGCAAGGAAGCTGAAGTGTTTGTTTGCGCGTGTTCACGCGCCTTGCGA] [+] EMBL BX466186 [AGGCAGAATCCCGCACGAGTGTAAAACTGTAAAGGGAACAATAANATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCGGTTGAGTCATCGTGCTCCGTCGGTCGGGGCTGTGACTCAGCGCTCCCCGCGGTACTGCAACAGGAATGGCCTGCACTATCTGTACCAAATCGTTTGGAGTATTTTCAACAAAGAGCACGGCTGTCCGGTGTGCAAGTTCTTCGTTCTGCTCGGGCTGCCTCAAGTACAAGCTGGTGCGTGACTGGCAAGGAAGCTGAAGTGTTTGTTTGCGCGTGTTCACGCGCCTTGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5656#1 ---------CCGCCCACGCGTCCGGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCC 51 consensus_5656#2 CCGAACAAAACAAAGTCTGTCGCTGCTGATCGGCTGCGGAAGGCCGTTTTTTTCTTTTCC 60 consensus_5656#3 ------------------------------------------------------------ consensus_5656#0 -------------CCGCCCACGCGTCCGACCGAAGGAAGGAGAACCGAGCGATAATACAG 47 consensus_5656#1 ATGAATTAAAACAGTTATT--TTTTAACGTGCGCCAGTGAAAAAGATTG-AAAACTGTAA 108 consensus_5656#2 ATGAATTAAAACAGTTATT--TTTTAACGTGCGCCAGTGAAAAAGATTG-AAAACTGTAA 117 consensus_5656#3 ----------------------------AGGCAGAATCCCGCACGAGTGTAAAACTGTAA 32 consensus_5656#0 ATATAGAAAAGCGTTTGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAGGATGCGT 107 * * ** * ** ** consensus_5656#1 AGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCG 168 consensus_5656#2 AGGGAACAATAAAATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCG 177 consensus_5656#3 AGGGAACAATAANATTGCAAAATATTGTAGAAAAAAGGAAAAGGCGGAAGAAAATCCCCG 92 consensus_5656#0 CGCATCGGTTCATGGCGCCGGACAATCGGACGGAGGCACAGAAGGTGCAGGACCTGCTGG 167 * * * ** * * * * * * * * ** * * * * consensus_5656#1 GT-GAGTCATCGTG----CTCCGTCGGTCGGGG-TGTGACTCA---GCGCTCCCCGCGGT 219 consensus_5656#2 GT-GAGTCATCGTG----CTCCGTCGGTCGGGG-TGTGACTCA---GCGCTCCCCGCGGT 228 consensus_5656#3 GTTGAGTCATCGTG----CTCCGTCGGTCGGGGCTGTGACTCA---GCGCTCCCCGCGGT 145 consensus_5656#0 GCCAGTTCGTGGAGGAAACCAAGCTAATCAGCGTGATGGACGACAAGCGTACCGAGCAGG 227 * ** * * * * * ** * * ** * *** ** ** * consensus_5656#1 ACT--GCAACAG-GAATGGCCTGCACTATCTGTACCAAAT--CGTTTGGATT--TTTCAA 272 consensus_5656#2 ACT--GCAACAG-GAATGGCCTGCACTATCTGTACCAAAT--CGTTTGGATT--TTTCAA 281 consensus_5656#3 ACT--GCAACAG-GAATGGCCTGCACTATCTGTACCAAAT--CGTTTGGAGTATTTTCAA 200 consensus_5656#0 ATGAGGAGATAGCGAAGCGATTGCAAGCATTGAAGCAATTTCCAACAGCAGGTGATGGAA 287 * * * ** *** * **** ** * *** * * * * * ** consensus_5656#1 CAAAGAGCACGGCTGTCCGGTGTGCAAGTT-TTCGTTCTGCTCGGGC--TGCCTCAAGTA 329 consensus_5656#2 CAAAGAGCACGGCTGTCCGGTGTGCAAGTT-TTCGTTCTGCTCGGGC--TGCCTCAAGTA 338 consensus_5656#3 CAAAGAGCACGGCTGTCCGGTGTGCAAGTTCTTCGTTCTGCTCGGGC--TGCCTCAAGTA 258 consensus_5656#0 CAGCAGCGACTGCGAGTGGCAACTCCAAGGCAACGATACTCCCGGACAGTGACTCGGACG 347 ** ** ** * * * ** * * *** * ** *** consensus_5656#1 CAAGC-TGGTGCGTGA-----TGGCAAG-AAGCTGAA-TGTTTGTTTGC--GC-TGTTCA 378 consensus_5656#2 CAAGC-TGGTGCGTGA-----TGGCAAG-AAGCTGAA-TGTTTGTTTGC--GC-TGTTCA 387 consensus_5656#3 CAAGC-TGGTGCGTGAC----TGGCAAGGAAGCTGAAGTGTTTGTTTGC--GCGTGTTCA 311 consensus_5656#0 AAGGCCTGACGGATGAGGAGTTGGCACGAAAGTTAGCCCAGCGGTACGCCGAGGAGGGTA 407 * ** ** * *** ***** * *** * ** ** * * consensus_5656#1 -GCGC-TTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGA 436 consensus_5656#2 -GCGC-TTGCGACTGTGAGTGTAAAGGAGGCTCCGAAAAGGGAGGCAACAGTTGCCCCGA 445 consensus_5656#3 CGCGCCTTGCGA------------------------------------------------ 323 consensus_5656#0 AGCTGGAGGCGAAACTGAACCTGGAAAGTGAGCTGGA---GGAGATTACACCAACACCG- 463 ** **** consensus_5656#1 ACCATCCAACGCCCAACGAAGACGCAGTACCGACGCAGAGCTCGAAAGAGCCGCCAAAGG 496 consensus_5656#2 ------------------------------------------------------------ consensus_5656#3 ------------------------------------------------------------ consensus_5656#0 -TCTTCGAACGTTGAGGAAGAGCTGCCTTGGTGTACGATCTGCAACGAGGATGCTGTTCT 522 consensus_5656#1 AACCGGATGGAGATGAGCTAATACGTAGCAAGCTGCAGGCACTGAAGGCAATCGATTTGG 556 consensus_5656#2 ------------------------------------------------------------ consensus_5656#3 ------------------------------------------------------------ consensus_5656#0 ACGGTGTCGAGGATGTGATAACGATCTGTA--CTGCAGGGCGTGCTACAAA--GAGTTCC 578 consensus_5656#1 GCGAGGAAGACGCACCGAAGGAAGGAGAACCGAGCGATAATACAGATATAGAAAAGCGTT 616 consensus_5656#2 ------------------------------------------------------------ consensus_5656#3 ------------------------------------------------------------ consensus_5656#0 ACTACGACGAAGATCCGCAGGAGCATCCGACGGT--ACAGTTCAAGGGCGGAAAAGGGCC 636 consensus_5656#1 TGGCAGCGTTAAAGGGAGTTGAGTATAAGGATTACAAG 654 consensus_5656#2 -------------------------------------- consensus_5656#3 -------------------------------------- consensus_5656#0 AACACGTGTTTAACACGTTTTTGTACG----------- 663 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||