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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGTGCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGGTGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTATTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCCCGGAACTAGGAAACGGCAGTGAAACCAATCCGCCAAGAAGTTAATTCCTGCTCATTTTCGTTTCAAATGGTCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCCCATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCTGTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTGCCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACGTGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTTGCAGCTTACCAAGAAATGACAATGAGCGAATGCTAGGTTTTTGTGTTTCCTGTTTTGCTGATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATACTATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATATGTAGCAAAATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA]
[+] EMBL BX624540 [GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGTGCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGGTGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTATTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCCCGGAACTAGGAAACGGCAGTGAAACCAATCCGCCAAGAAGTTAATTCCTGCTCATTTTCGTTTCAAATGGTCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCCCATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCTGTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTGCCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACGTGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTTGCAGCTTACCAAGAAATGACAATGAGCGAATGCTAGGTTTTTGTGTTTCCTGTTTTGCTGATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATACTATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATATGTAGCAAAATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA]
consensusID : consensus_566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATGTGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGATGAATCATATGTGTACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAATGGCAGGCGCCTCATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGTAAATTGTGTCGAATTGGGTGAAATAGGAAAGAAATTAACATACGGGCTGCAACGTACATCTCGCAAACGTGTAATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTGCAAAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTGTATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGGTTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCTCCCCCAGTTGTGCATTTCGGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGAACTTGTGCTGGTATAGTAAGATGTCGATGTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATCGGCAGCGACCAGTACCAGAAGCG]
[+] EMBL BM621516 [CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATGTGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGATGAATCATATGTGTACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAATGGCAGGCGCCTCATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGTAAATTGTGTCGAATTGGGTGAAATAGGAAAGAAATTAACATACGGGCTGCAACGTACATCTCGCAAACGTGTAATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTGCAAAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTGTATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGGTTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCTCCCCCAGTTGTGCATTTCGGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGAACTTGTGCTGGTATAGTAAGATGTCGATGTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATCGGCAGCGACCAGTACCAGAAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_566#0 GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGT 60
consensus_566#1 ------------------------------------------------------------
consensus_566#0 GCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGG 120
consensus_566#1 -------CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATG 53
****** ** ** ** * ** * *** *
consensus_566#0 TGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTA 180
consensus_566#1 TGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGA--TGAATCATATGTG 111
** * * * * * * ** ** ** * **** * * * * * *
consensus_566#0 TTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCC 240
consensus_566#1 T-ACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAAT-GGCAGGCGCCT 169
* * * * * * ** ** * ** *** * *
consensus_566#0 CGGAACTAGGAAACGGCAGTGAAACCAATCCGCCA-AGAAGTTAATTCCTGCTCATTTTC 299
consensus_566#1 CATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGT 229
* ****** ** *** * * ** ***** **** *** *
consensus_566#0 GTTTCAAATGG--TCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCC 357
consensus_566#1 AAATTGTGTCGAATTGGGTGAAATAG-GAAAGAAATTAACATACGGGCTGCAACGTACAT 288
* * * * * ***** * * ** ** * ***** * ** ***
consensus_566#0 CATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCT 417
consensus_566#1 C-TCGCAAACGTGTA-------ATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTG--CA 338
* * ** * * * * ** * **** * * ** * ** * * *
consensus_566#0 GTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTG 477
consensus_566#1 AAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTG 398
* ** ** *** * * ** * ** ** ** **
consensus_566#0 CCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACG 537
consensus_566#1 T-----ATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGG 453
*** * *** * * * ** * * *** ** * ** * * *
consensus_566#0 TGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTT 597
consensus_566#1 TTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCT-CCCCCAGTT 512
* ** *** **** * * * * * * * *** ****
consensus_566#0 GCAGCTTACCAAGAAATGACAATGAGCGAATGC-TAGGTTTTTGTGTTTCCTGTTTTGCT 656
consensus_566#1 GTGCATTTC--GGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAA 570
* ** * * * ** * * ** * * *** ** ** **
consensus_566#0 GATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATAC 716
consensus_566#1 TAAGCGACTTCATTTCACGGGC---------TGAACTTGTGCTGG--TATAGTAAGATGT 619
* * *** * * ** * * *** **** * * * ** * ***
consensus_566#0 TATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATA 776
consensus_566#1 CGAT--GTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATC 677
* * **** * * * * *** * * ** * ** * **
consensus_566#0 TGTAGCAA--AATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA 827
consensus_566#1 GGCAGCGACCAGTACCAGAAGCG------------------------------ 700
* *** * * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||