These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGTGCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGGTGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTATTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCCCGGAACTAGGAAACGGCAGTGAAACCAATCCGCCAAGAAGTTAATTCCTGCTCATTTTCGTTTCAAATGGTCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCCCATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCTGTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTGCCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACGTGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTTGCAGCTTACCAAGAAATGACAATGAGCGAATGCTAGGTTTTTGTGTTTCCTGTTTTGCTGATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATACTATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATATGTAGCAAAATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA] [+] EMBL BX624540 [GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGTGCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGGTGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTATTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCCCGGAACTAGGAAACGGCAGTGAAACCAATCCGCCAAGAAGTTAATTCCTGCTCATTTTCGTTTCAAATGGTCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCCCATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCTGTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTGCCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACGTGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTTGCAGCTTACCAAGAAATGACAATGAGCGAATGCTAGGTTTTTGTGTTTCCTGTTTTGCTGATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATACTATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATATGTAGCAAAATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA] consensusID : consensus_566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATGTGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGATGAATCATATGTGTACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAATGGCAGGCGCCTCATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGTAAATTGTGTCGAATTGGGTGAAATAGGAAAGAAATTAACATACGGGCTGCAACGTACATCTCGCAAACGTGTAATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTGCAAAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTGTATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGGTTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCTCCCCCAGTTGTGCATTTCGGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGAACTTGTGCTGGTATAGTAAGATGTCGATGTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATCGGCAGCGACCAGTACCAGAAGCG] [+] EMBL BM621516 [CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATGTGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGATGAATCATATGTGTACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAATGGCAGGCGCCTCATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGTAAATTGTGTCGAATTGGGTGAAATAGGAAAGAAATTAACATACGGGCTGCAACGTACATCTCGCAAACGTGTAATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTGCAAAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTGTATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGGTTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCTCCCCCAGTTGTGCATTTCGGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGAACTTGTGCTGGTATAGTAAGATGTCGATGTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATCGGCAGCGACCAGTACCAGAAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_566#0 GTGTGCGATTTCGTTCATCAATCTTCAAATAAGCGACTTCATTTCACGGGCTGTACTTGT 60 consensus_566#1 ------------------------------------------------------------ consensus_566#0 GCTGGTATAGTAAGAAAATAAGAACGCTTTGCCTGTTGGCAAAGTTCAACCCAGCACTGG 120 consensus_566#1 -------CCGTAAGAGCGCAACTGGCAATTACCCACCAGTCGTGTGTGGCTTGGCAAATG 53 ****** ** ** ** * ** * *** * consensus_566#0 TGCACGGGATGGCGCACACACTTGCTATTGGTGTGTTAATGACGCACCGGAAAAGACTTA 180 consensus_566#1 TGGTTGTGTTTGTGATGATTCTAATGATCATGATGATGATGATGA--TGAATCATATGTG 111 ** * * * * * * ** ** ** * **** * * * * * * consensus_566#0 TTATTCATCCAAACACTTTGTCCCAACGTCGCTGGAACTGTCGAGATCCGGCGTACTGCC 240 consensus_566#1 T-ACGCGGTGAGAAAGCAAAAGTGAATACTTACGGCTGCAATGCGAAT-GGCAGGCGCCT 169 * * * * * * ** ** * ** *** * * consensus_566#0 CGGAACTAGGAAACGGCAGTGAAACCAATCCGCCA-AGAAGTTAATTCCTGCTCATTTTC 299 consensus_566#1 CATAACTAGTTGGAAACACGAAAAACGGCCTGCGGCAGAAGAGAATTGCTGTCTCTCGGT 229 * ****** ** *** * * ** ***** **** *** * consensus_566#0 GTTTCAAATGG--TCGACAAAAATATTGTACCAAGTTGATATACGTCCAACATCGTTTCC 357 consensus_566#1 AAATTGTGTCGAATTGGGTGAAATAG-GAAAGAAATTAACATACGGGCTGCAACGTACAT 288 * * * * * ***** * * ** ** * ***** * ** *** consensus_566#0 CATTGCCACCAAGAATCCAGGCATTGGGTGGCAAAAGGGTCCAATCGGTTCATTTCATCT 417 consensus_566#1 C-TCGCAAACGTGTA-------ATAGTGTGGTGTATGCCTCTCTTGCGTGAAGGTG--CA 338 * * ** * * * * ** * **** * * ** * ** * * * consensus_566#0 GTTTAAGTACTGCACAATATGCACTTATTTGCAACGCAAATTTAATGGAAAAAGTGGTTG 477 consensus_566#1 AAATTGGTCACACAAAATCAGTGGCCACAGTTTACATGTGTGGAAGGGTGTGTATGAGTG 398 * ** ** *** * * ** * ** ** ** ** consensus_566#0 CCAAAAATGAATGTTTGATTGTATTTAATGGGTGCACAATGATGCTCAAATGAGACAACG 537 consensus_566#1 T-----ATGGTTTTTTAGCTCTGATGAAAAGTGGTGAAATATTGTGAGTACGATAAATGG 453 *** * *** * * * ** * * *** ** * ** * * * consensus_566#0 TGCGAACATATTGTGCTGGGGGAGCTATAATAAGTTCTTCAGGGAAAGCTATTTATAGTT 597 consensus_566#1 TTTAAAAATAGGCTGCTCTTCCCGTTCCGGTGACTGCAAAAATTCCGGCT-CCCCCAGTT 512 * ** *** **** * * * * * * * *** **** consensus_566#0 GCAGCTTACCAAGAAATGACAATGAGCGAATGC-TAGGTTTTTGTGTTTCCTGTTTTGCT 656 consensus_566#1 GTGCATTTC--GGCAGCAGCATCGGGTTGTTGTGTGCGATTTCGTTCATCAATCTTCAAA 570 * ** * * * ** * * ** * * *** ** ** ** consensus_566#0 GATGTGACGCTAATACAGGCCCAGGAATTTANGAAAATGTGTTAGATTTTACAAGGATAC 716 consensus_566#1 TAAGCGACTTCATTTCACGGGC---------TGAACTTGTGCTGG--TATAGTAAGATGT 619 * * *** * * ** * * *** **** * * * ** * *** consensus_566#0 TATTTCGGGAGCAGAACATAAAGAGCCGAACAGGATAAAGAAGTTAGACATTGCCAAATA 776 consensus_566#1 CGAT--GTGAGCGGTGTACCACGGTTCGATCGCAGCACCAAACCAGCATCTTCCGTCATC 677 * * **** * * * * *** * * ** * ** * ** consensus_566#0 TGTAGCAA--AATTTTGAAACTGACATACCTACAGTAATTCAGAACGGTTCAA 827 consensus_566#1 GGCAGCGACCAGTACCAGAAGCG------------------------------ 700 * *** * * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||