These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1181 fasta sequence [CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGGCCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAACG-CGCTGCGAAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCGCATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTTAGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGGTAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAGTGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCATGATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGTTGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT] [+] EMBL BM602323 [CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGGCCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTAC ACG CGCTGCGAAAGGGTACGTCGGGAG ] [+] EMBL BM590997 [ ccgACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACG TGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAACGCCGCTGCGAAGGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATT ] [+] EMBL BX616540 [ AACAATCGTTCCAAATTCATGAGTACAACG CGCTGCG AAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGA GGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCGCATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTTAGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGGTAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAGTGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCATGATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGTTGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT] consensusID : consensus_5661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [TTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAATCGTTCCAAATTCATGAGTACAACGCGCTGCGAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGATGAGAAGCGGGTAAACAAACCACTCCGCAACCGAACTT] [+] EMBL BX627287 [TTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAATCGTTCCAAATTCATGAGTACAACGCGCTGCGAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGATGAGAAGCGGGTAAACAAACCACTCCGCAACCGAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5661#0 CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGG 60 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 CCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTC 120 consensus_5661#1 ------------------------------------------------TTGATAATCCTC 12 ************ consensus_5661#0 TGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGC 180 consensus_5661#1 TGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGC 72 ************************************************************ consensus_5661#0 GGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCG 240 consensus_5661#1 GGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCG 132 ************************************************************ consensus_5661#0 AGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACA 300 consensus_5661#1 AGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACA 192 ******* **************************************************** consensus_5661#0 AAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTAC 360 consensus_5661#1 AAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTAC 252 ************************************************************ consensus_5661#0 TAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCG 420 consensus_5661#1 TAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCG 312 ************************************************************ consensus_5661#0 GCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAA 480 consensus_5661#1 GCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAA 372 ************************************************************ consensus_5661#0 GGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCG 540 consensus_5661#1 GGAACAACAA-------------------------------------------------- 382 ********** consensus_5661#0 CAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCA 600 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 GCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAAC 660 consensus_5661#1 ------------------------------------TCGTTCCAAATTCATGAGTACAAC 406 ************************ consensus_5661#0 GCGCTGCGAAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGG 720 consensus_5661#1 GCGCTGCGAA-GGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGG 465 ********** ************************************************* consensus_5661#0 GATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTG 780 consensus_5661#1 -ATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTG 524 ****************** *************************************** consensus_5661#0 GAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCG 840 consensus_5661#1 GAGGAAGATGAAGAGCAAGAGGAGGAGGAGGA---TGAGAAGCGGGTAAACAAACCACTC 581 ******************************** ****************** consensus_5661#0 CATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTT 900 consensus_5661#1 CGCAACCGAACTT----------------------------------------------- 594 * ** ** consensus_5661#0 AGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGG 960 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 TAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAG 1020 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 TGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCAT 1080 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 GATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGT 1140 consensus_5661#1 ------------------------------------------------------------ consensus_5661#0 TGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT 1181 consensus_5661#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||