These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1098 fasta sequence [CCGCGGACGCGTGGGCGCGATCACCACCAACACCACGACAGCAGCAGCAACGGCACGACACAGACAGCGGCAGCCGTAACGCCATCGGCTAAGCAGTCGGCTCCAGGGTCAGACGGTGGCAACGGCGGCAGTGGCCACCAACACAAGCACAACGGCAATACAGCACTGGAGGCAGCAGCAGTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAGCTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAATGGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAGGAGGAGGAGGACGACGACGACGAAGACGTCGAAGAAGGAGAGTGCGCCAACGTGGACGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGATCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACGCGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGACGACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGCACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCTGTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACCAAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGTGCTTCCACGGCAGCAGCAGCGGTCCAGGCGATCG-AGGTCAGCGGGCGCCTGCCGCCAGAGGGCGCCGCAAACAACAGTGTAAATGGTGTCGGTGGTGGTGGCAGTGCAAAACAACATAGCAGTGGTTCTACCGGTGCGCTATTGCAGCAGGGCGGCGGTGGCTCCGTTGGCTCGTCCACGGCACCATCGCCACCTTCCCTGACGCGGCGCGAGATCGAGAAGAATCAAATCAATCGCGAAAAGAGTGGTGAACCCGCGGTGCCAGCAGCAGCGGCATCATCCGGCACCAACAGCATTAACGGTAGTGTGGCCAGTGGT] [+] EMBL BM597404 [CCGCGGACGCGTGGGCGCGATCACCACCAACACCACGACAGCAGCAGCAACGGCACGACACAGACAGCGGCAGCCGTAACGCCATCGGCTAAGCAGTCGGCTCCAGGGTCAGACGGTGGCAACGGCGGCAGTGGCCACCAACACAAGCACAACGGCAATACAGCACTGGAGGCAGCAGCAGTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAGCTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAATGGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAGGAGGAGGAGGACGACGACGACGAAGACGTCGAAGAAGGAGAGTGCGACAACGTGGACGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGATCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACGCGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGA ] [+] EMBL BM614224 [ cCGCCCACGCGTCCGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGATCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACGCGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGACGACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGCACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCTGTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACCAAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGTGCTTCCACGGCAGCAGCAGCGGTCCAGGCGATCGAAGGTCAGCGGGCGCCTGCCGCCAGAGGGCGCCGCAAACAACAGTGTAAATGGTGTCGGTGGTGGTGGCAGTGC ] [+] EMBL BM591093 [ ccgAACGTGGACGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGATCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACGCGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGACGACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGCACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCTGTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACCAAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGTGCTTCCACGGCAGCAGCAGCGGTCCAGGCGATCG AGGTCAGCGGGCGCCTGCCGCCAGAGGGCGCCGCAAACAACAGTGTAAATGGTGTCGGTGGTGGTGGCAGTGCAAAACAACATAGCAGTGGTTCTACCGGTGCGCTATTGCAGCAGGGCGGCGGTGGCTCCGTTGGCTCGTCCACGGCACCATCGCCACCTTCCCTGACGCGGCGCGAGATCGAGAAGAATCAAATCAATCGCGAAAAGAGTGGTGAACCCGCGGTGCCAGCAGCAGCGGCATCATCCGGCACCAACAGCATTAACGGTAGTGTGGCCAGTGGT] consensusID : consensus_5663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGCGGACGCGTGGGCTGGAGGCAGCAGCAGTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAGCTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAACGGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAGGAGGAGGACGACGACGACGACGAAGACGTCGAAGAAGGAGAGGGCGACAACGTGGACGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGGTCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACACGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGACGACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGCACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCTGTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACTAAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGTGCTTCCACAGCAGCAGCAGCGGTCCAGGCGATCGAGGTCAGCGGG] [+] EMBL BM618379 [CCGCGGACGCGTGGGCTGGAGGCAGCAGCAGTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAGCTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAACGGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAGGAGGAGGACGACGACGACGACGAAGACGTCGAAGAAGGAGAGGGCGACAACGTGGACGGTGAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGGTCCTACCAGGTCAATCCCGAATCGAGCGAGAGCGAGGACGCACACGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGACGACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGCACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCTGTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACTAAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGTGCTTCCACAGCAGCAGCAGCGGTCCAGGCGATCGAGGTCAGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5663#0 CCGCGGACGCGTGGGCGCGATCACCACCAACACCACGACAGCAGCAGCAACGGCACGACA 60 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 CAGACAGCGGCAGCCGTAACGCCATCGGCTAAGCAGTCGGCTCCAGGGTCAGACGGTGGC 120 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 AACGGCGGCAGTGGCCACCAACACAAGCACAACGGCAATACAGCACTGGAGGCAGCAGCA 180 consensus_5663#1 -----------------------------CCGCGGACGCGTGG-GCTGGAGGCAGCAGCA 30 * *** * *************** consensus_5663#0 GTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAG 240 consensus_5663#1 GTACCGAGCGCCGCGTCATCGCCGACGACGGGAATTTGCGATTCGCCTTCGATCCAGCAG 90 ************************************************************ consensus_5663#0 CTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAAT 300 consensus_5663#1 CTCACGACCAAGCTCGGCAGTCTACATCTGGCGACCTCTACGCCGACTGGCGCTGCGAAC 150 *********************************************************** consensus_5663#0 GGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAG 360 consensus_5663#1 GGATCCGCCGTCTCGGTACAGGATCGCCGTAACCTCGAGTACGTAACGAGCGACGAGGAG 210 ************************************************************ consensus_5663#0 GAGGAGGAGGACGACGACGACGAAGACGTCGAAGAAGGAGAGTGCGCCAACGTGGACGGT 420 consensus_5663#1 GAGGAGGACGACGACGACGACGAAGACGTCGAAGAAGGAGAGGGCGACAACGTGGACGGT 270 ******** ********************************* *** ************* consensus_5663#0 GAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGATCCTACCAGGTCAATCCCGAATCG 480 consensus_5663#1 GAGAACGAGCGTGGACGGCGCAACAACAGCTCCCGGTCCTACCAGGTCAATCCCGAATCG 330 *********************************** ************************ consensus_5663#0 AGCGAGAGCGAGGACGCACGCGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGAC 540 consensus_5663#1 AGCGAGAGCGAGGACGCACACGACGGTGCGGCCAGTGGTGGCAGCGAGAACGACGCGGAC 390 ******************* **************************************** consensus_5663#0 GACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGC 600 consensus_5663#1 GACGACGAGGAAGCTGAACTCGACGACGACGACGAGCGTTCGGTGCGGAAGATTTCACGC 450 ************************************************************ consensus_5663#0 ACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCT 660 consensus_5663#1 ACCGCGATGGAGAACATTGCCCGCGCCGGCACTACGACGCAGTTCCGATTCAATGGCGCT 510 ************************************************************ consensus_5663#0 GTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACC 720 consensus_5663#1 GTCAAATCGTACCTGCCCGGCGGTGCGATGGGGAAGCCCGCCGCTCCCGCTCCGAGCACT 570 *********************************************************** consensus_5663#0 AAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGT 780 consensus_5663#1 AAGGCACCCGCGCCCCCGATCCCGATGTCCCGCGAGAGTCTCGCCGGCAAGGCTAACGGT 630 ************************************************************ consensus_5663#0 GCTTCCACGGCAGCAGCAGCGGTCCAGGCGATCGAGGTCAGCGGGCGCCTGCCGCCAGAG 840 consensus_5663#1 GCTTCCACAGCAGCAGCAGCGGTCCAGGCGATCGAGGTCAGCGGG--------------- 675 ******** ************************************ consensus_5663#0 GGCGCCGCAAACAACAGTGTAAATGGTGTCGGTGGTGGTGGCAGTGCAAAACAACATAGC 900 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 AGTGGTTCTACCGGTGCGCTATTGCAGCAGGGCGGCGGTGGCTCCGTTGGCTCGTCCACG 960 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 GCACCATCGCCACCTTCCCTGACGCGGCGCGAGATCGAGAAGAATCAAATCAATCGCGAA 1020 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 AAGAGTGGTGAACCCGCGGTGCCAGCAGCAGCGGCATCATCCGGCACCAACAGCATTAAC 1080 consensus_5663#1 ------------------------------------------------------------ consensus_5663#0 GGTAGTGTGGCCAGTGGT 1098 consensus_5663#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||