These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1079 fasta sequence [CCGCCCACGCGTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCCCGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACATACTCCCCAATTGGTATAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGCTGTTGGCTCATGATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGGGCTGCGGGCGGTACCTATAATGGGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGGCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACGATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGTCAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCCGTTCG] [+] EMBL BM591380 [CCGCCCACGCGTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCCCGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACATACTCCCCAATTGGTATAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGCTGTTGGCTCATGATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGGGCTGCGGGCGGTACCTATAATGGGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGGCCGAACAACTAC ] [+] EMBL BM598409 [ ccgGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGTGCTGCGGGCGGTACCTATAAT GGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGCCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACGATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGTCAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCCGTTCG] consensusID : consensus_5667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAATAAGATGGCCCGAGGAGCTGGAACCTCTTATAGCAAATCCATTCCATCGACCTGCACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGTTGTTGGCTCACGATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCCTCCAGGGTGTGCTGCGGGCGGTACCTATAATGGCATCCCACCGGCCCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTGCTGGCCCG] [+] EMBL BM591999 [CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAATAAGATGGCCCGAGGAGCTGGAACCTCTTATAGCAAATCCATTCCATCGACCTGCACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGTTGTTGGCTCACGATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCCTCCAGGGTGTGCTGCGGGCGGTACCTATAATGGCATCCCACCGGCCCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTGCTGGCCCG] consensusID : consensus_5667#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCGCCCACGCGTCCGAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAGCGGGAGCTAGTGGCGAATCGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGGTATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAATAGAAAATCTCGCCCAAACACCCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCGCTTGCATTAGGATGCGGTAAAACCATGAAACAATGCATGTGTCTGTATCTGCGTATGAAGGACCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGTGTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGATGGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAATTTGCATCTATTCCGCAACTACGAGGCCGCCAGCGATA] [+] EMBL BM645834 [CCGCCCACGCGTCCGAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAGCGGGAGCTAGTGGCGAATCGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGGTATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAATAGAAAATCTCGCCCAAACACCCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCGCTTGCATTAGGATGCGGTAAAACCATGAAACAATGCATGTGTCTGTATCTGCGTATGAAGGACCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGTGTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGATGGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAATTTGCATCTATTCCGCAACTACGAGGCCGCCAGCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5667#0 CCGCCCACGC--GTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCC 58 consensus_5667#1 CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAAT------ 54 consensus_5667#2 CCGCCCACGC--GTCCG---AAAGGCGCGA--GCATGATGGATGCGTTGCTTTCG----- 48 *** ** * * * * * ** * ** * * consensus_5667#0 CGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACA-TACTCCCCAATTGGTA 117 consensus_5667#1 ------AAGATGGCCCGAGGAGCTGGAAC--CTCTTATAGCAA-ATCCATTCCATCGACC 105 consensus_5667#2 ------ATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACG 102 * * * * * * * * * consensus_5667#0 TAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAA 177 consensus_5667#1 TG--CACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAA 163 consensus_5667#2 TCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTG--GGCGATTTCGATGTCGGCGA--CGA 158 * * * *** * * * * ** * ****** **** ** * * * consensus_5667#0 ACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCC 237 consensus_5667#1 ACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCC 223 consensus_5667#2 ACCGA-TGCTAACAGATGA-ACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGA- 215 ** * ** * *** * ** * * *** * * * ** * *** consensus_5667#0 GTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGAT---GTAAATTTAGTAAATTTCA 294 consensus_5667#1 GTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGAT---GTAAATTTAGTAAATTTCA 280 consensus_5667#2 ATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAG--CG 273 ** * * ** * * ** ** * *** ** * ** ** * consensus_5667#0 ACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGC 354 consensus_5667#1 ACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGT 340 consensus_5667#2 GGAGCTAGTGGCGAAT-CGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGG 332 ** * * * * * * **** ** **** * * * ** * ** * * consensus_5667#0 TGTTGGCTCATG-ATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCAT 413 consensus_5667#1 TGTTGGCTCACG-ATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACAT 399 consensus_5667#2 TATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAA---TAGAAAATCTCGCCCAAAC 389 * * * * * ** * *** *** ** * ** *** * * consensus_5667#0 ATTGCGGTAGAAAAGAAGCTTATTCCGATCGTG-----CAGTGTTTGGTAGTGTTCGGTG 468 consensus_5667#1 ATTGCGGTAGAAAAGAAGCTTATTCCGATCGTG-----CAGTGTTTGGTAGTGTTCGGTG 454 consensus_5667#2 AC--CCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCG 447 * * * * * * * ***** **** * ** ** ** * consensus_5667#0 CAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATG 528 consensus_5667#1 CGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATG 514 consensus_5667#2 CTTGCATTAGGATGCGGTAAAACCATGAAACAATGCAT-GTGTCTGTATCTG--CGTATG 504 * * *** * * * * ** *** * ** * * ** ** * * *** consensus_5667#0 ACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGT 588 consensus_5667#1 ACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGT 574 consensus_5667#2 AAGGA----CCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGT 560 * * * *** **** * ** * * ** * * * ******* consensus_5667#0 GCCCCGAAAAGGGTAGTAAATGTCC-TC--CAGGGTGGGCTGCGGGCGGTACCTAT-AAT 644 consensus_5667#1 GCCCCGAAAAGGGTAGTAAATGTCCCTC--CAGGGTGTGCTGCGGGCGGTACCTAT-AAT 631 consensus_5667#2 GTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGAT 620 * * * * * * ** * ** * * * * * ** ** consensus_5667#0 GGGCATCCCACCGGC--CCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTG 702 consensus_5667#1 GG-CATCCCACCGGC--CCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTG 688 consensus_5667#2 GGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAA---TTTGCATCTATTCCGCAACTA 677 ** * * * * * *** * * * ** * ** * *** * consensus_5667#0 CTGGGCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACG 762 consensus_5667#1 CTGGCCCG---------------------------------------------------- 696 consensus_5667#2 CGAGGCCGCCAGCGATA------------------------------------------- 694 * * *** consensus_5667#0 ATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGT 822 consensus_5667#1 ------------------------------------------------------------ consensus_5667#2 ------------------------------------------------------------ consensus_5667#0 CAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTA 882 consensus_5667#1 ------------------------------------------------------------ consensus_5667#2 ------------------------------------------------------------ consensus_5667#0 GAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTG 942 consensus_5667#1 ------------------------------------------------------------ consensus_5667#2 ------------------------------------------------------------ consensus_5667#0 AACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGT 1002 consensus_5667#1 ------------------------------------------------------------ consensus_5667#2 ------------------------------------------------------------ consensus_5667#0 CCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGA 1062 consensus_5667#1 ------------------------------------------------------------ consensus_5667#2 ------------------------------------------------------------ consensus_5667#0 TTCGCGGCCCCCGTTCG 1079 consensus_5667#1 ----------------- consensus_5667#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||