These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1232 fasta sequence [TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCCGAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAG-ATGCGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCTCGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGTGTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATTGACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCACCATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTGCAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA] [+] EMBL CNS090DP [TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCCGAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAG ATGCG ] [-] EMBL CNS090DQ [ AAACGGCGGCCAACCTTCGCCGCGACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTT GCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAGCAT CGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCTCGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGTGTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATTGACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCACCATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTGCAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA] consensusID : consensus_5674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CAGAATCGCACGAGGTNGTATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGATGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGANTTAGNTCGATACGCCCGGC] [+] EMBL BX469017 [CAGAATCGCACGAGGTNGTATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGATGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGANTTAGNTCGATACGCCCGGC] [+] EMBL BX628100 [ GAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCT GGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGCCCGGTCGA TATTCTCGTGAACAATGCCGGCATCTTGCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5674#0 TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTG 60 consensus_5674#1 -----------------CAGAATCGCACGAGGTNG---TATACTGTGAGAAGTGATTTTG 40 * * ** ** * ********************* consensus_5674#0 CCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCC 120 consensus_5674#1 CCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTG 100 *************** *************** ************************* consensus_5674#0 GAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAAC 180 consensus_5674#1 GAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAAC 160 *********** *********** ************************************ consensus_5674#0 TAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGG-TGTTTGCCT 239 consensus_5674#1 TAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCT 220 ************************************************** ********* consensus_5674#0 TCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAA 299 consensus_5674#1 TCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAA 280 ************************************************************ consensus_5674#0 AAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGA 359 consensus_5674#1 AAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGA 340 ** ********************************************************* consensus_5674#0 TCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGA 419 consensus_5674#1 TCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGA 400 ************************************************************ consensus_5674#0 ACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGG 479 consensus_5674#1 ACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGG 460 ******** ****** **** ************************************** consensus_5674#0 TTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCG 539 consensus_5674#1 TTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCG 520 **** ************** ************************** ************* consensus_5674#0 GCCCGGTCGA-TATTCTCGTGAACAATGCCGGCATCTTGCC-TACCAGCTTCTCCCAGGA 597 consensus_5674#1 GACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGA 580 * ******** ***************************** ****************** consensus_5674#0 TGCGCTACCATC-CCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGA 656 consensus_5674#1 TGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGA 640 ****** ***** *********************************************** consensus_5674#0 CCACACAAACC-TTCATCG-ACAG-CATGATCCGACGGCGGAAGGGACACATCGTAGCGA 713 consensus_5674#1 CCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGA 700 ********* * ******* **** *********************************** consensus_5674#0 TT-AGCTCGAT-CGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAA 771 consensus_5674#1 NTTAGNTCGATACGCCCGGC---------------------------------------- 720 * ** ***** **** * consensus_5674#0 GTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGC 831 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 GAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGAT 891 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 CAGTTTGCTGAAAGATGCGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCT 951 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 CGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGT 1011 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 GTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATT 1071 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 GACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCAC 1131 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 CATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTG 1191 consensus_5674#1 ------------------------------------------------------------ consensus_5674#0 CAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA 1232 consensus_5674#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||