These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCTTTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAACGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTAGTGTTGCCCCCCACATCCCTGGGGATGACCTGTACCGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCTTTTCCACCAGCAGC] [+] EMBL BM621468 [CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCTTTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAACGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTAGTGTTGCCCCCCACATCCCTGGGGATGACCTGTACCGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCTTTTCCACCAGCAGC] consensusID : consensus_568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGTTTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAACGCCCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAGAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC] [+] EMBL BM639055 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGTTTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAACGCCCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAGAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_568#0 ----------------CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCG 44 consensus_568#1 CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCG 60 ** * * ********************************* consensus_568#0 CTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAG 104 consensus_568#1 CTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAG 120 ************************************************************ consensus_568#0 GTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCT 164 consensus_568#1 GTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGT 180 ********************************************************** * consensus_568#0 TTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAA 224 consensus_568#1 TTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAA 240 ******** ************************************* ************ consensus_568#0 CGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTA 284 consensus_568#1 CGCC--CCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTA 298 **** ****************************************************** consensus_568#0 GATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCT 344 consensus_568#1 GATCGAAAAAA-GAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCT 357 *********** ************************** ********************* consensus_568#0 TCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACT 404 consensus_568#1 TCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACT 417 ************************************************************ consensus_568#0 TAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGG 464 consensus_568#1 TAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGG 477 ************************************************************ consensus_568#0 TCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGAC 524 consensus_568#1 TCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGAC 537 ************************************************************ consensus_568#0 GGTTTTGCTCAAGTCAGTGTTTT-AGTGTTGCCCCCCACATCCCTGGGGATGACCTGTAC 583 consensus_568#1 GGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC----------------------- 574 *********************** ******* ** ** consensus_568#0 CGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCT 643 consensus_568#1 ------------------------------------------------------------ consensus_568#0 TTTCCACCAGCAGC 657 consensus_568#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||