These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAAACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCTCACGCTGGCTTAATAG] [+] EMBL BM654664 [TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAAACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCTCACGCTGGCTTAATAG] [+] EMBL BM595532 [ ccgATCT GAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGGATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGAAAGAAAATCCTCACGCTGGCT ] consensusID : consensus_5688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCCCACGCGTCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA] [+] EMBL BM608557 [CCGCCCACGCGTCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA] consensusID : consensus_5688#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTTCCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAGATCCTTTGGATGCATTTATGGGCTGGGATTGGAA] [+] EMBL BM594563 [CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTTCCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAGATCCTTTGGATGCATTTATGGGCTGGGATTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5688#0 -----TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAA 55 consensus_5688#1 ----------------------------------------------------CCGCCCAC 8 consensus_5688#2 CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAA 60 * ** consensus_5688#0 ACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 115 consensus_5688#1 GCG--TCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 66 consensus_5688#2 ACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 120 * * ********** **************************************** consensus_5688#0 TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 175 consensus_5688#1 TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 126 consensus_5688#2 TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 180 ************************************************************ consensus_5688#0 GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAG 235 consensus_5688#1 GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAG 186 consensus_5688#2 GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAG 240 *************************************************** ******** consensus_5688#0 ACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 295 consensus_5688#1 ACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 246 consensus_5688#2 ACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 300 ****** ***************************************************** consensus_5688#0 TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 355 consensus_5688#1 TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 306 consensus_5688#2 TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 360 ************************************************************ consensus_5688#0 ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 415 consensus_5688#1 ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 366 consensus_5688#2 ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 420 ************************************************************ consensus_5688#0 GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATG---------------- 459 consensus_5688#1 GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATG---------------- 410 consensus_5688#2 GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTT 480 ******************************************** consensus_5688#0 --------------------AAATCCCAAAAAATATATCCGATGAAGAA-GATGAAGAAG 498 consensus_5688#1 --------------------AAATCCCAAAAAATATATCCGATGAAGAA-GATGAAGAAG 449 consensus_5688#2 CCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAG 540 ***************************** ********** consensus_5688#0 ATCCTTTGGATGCATTTATGG-CTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAA 557 consensus_5688#1 ATCCTTTGGATGCATTTATGG-CTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAA 508 consensus_5688#2 ATCCTTTGGATGCATTTATGGGCTGGGATTGGAA-------------------------- 574 ********************* **** **** * consensus_5688#0 ATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGAT 617 consensus_5688#1 ATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGAT 568 consensus_5688#2 ------------------------------------------------------------ consensus_5688#0 GACGAAGAAAGTTATTATCGATACATGCAAGAAAATCC-TCACGCTGGCTTAATAG---- 672 consensus_5688#1 GACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA 628 consensus_5688#2 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||