These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [CTGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGCGATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGAGAATGACAAAAGCTGTACCACGTATAATTCTGAATTTGCTCCTGATGATGAAGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTCTGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGTAAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTACTTGTACCGGAAAAAACTCAGACTTACAT] [+] EMBL BX623149 [CTGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGCGATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGAGAATGACAAAAGCTGTACCACGTATAATTCTGAATTTGCTCCTGATGATGAAGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTCTGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGTAAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTACTTGTACCGGAAAAAACTCAGACTTACAT] [+] EMBL BX610496 [ TCCGACCAGCTGTTAGTAAGCGGAAATGATAATCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGTGTGCAGGAAAAGAAATTAGGGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCACCGTTACCAAGCGGGTATGAAACCCCGCCAGAGGAGACGAA ] consensusID : consensus_5702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCGGGCCGCTAATAAGCGGTTACGAAACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGCAATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGAGAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGAAGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTACGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGACGACTAGCGAGAAAGAGTCAAGCGATATGTCGGTATCGGAAAAAGCTGAGGCAATCTGACTTGCCGGCAAAGATATCAGGGAATGACAAAAGCTGTACCTCATATAATTCTGAATTTGCTGCTTCTGATGATGAAGAAGATTTGGTCAATGACTCCGGGGCATCAAATTCGAAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACAAATC] [+] EMBL BM596302 [CCGGGCCGCTAATAAGCGGTTACGAAACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGCAATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGAGAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGAAGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTACGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGACGACTAGCGAGAAAGAGTCAAGCGATATGTCGGTATCGGAAAAAGCTGAGGCAATCTGACTTGCCGGCAAAGATATCAGGGAATGACAAAAGCTGTACCTCATATAATTCTGAATTTGCTGCTTCTGATGATGAAGAAGATTTGGTCAATGACTCCGGGGCATCAAATTCGAAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACAAATC] consensusID : consensus_5702#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAATGATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTCTAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGAAACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGCGATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAACAATGACAAAACATGTACTTTTAAAAAATCTGCTTCTGATGATGAAGAAGATATGGGCAATAACTCTGAGACATCAAATTCCGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACCAAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGCCAGAAAGAATCAAGCGATGTACTTGTACCGGGAAAAACTGAGGGTATTTGGTGAGTTACAGGCAAAGAAATTAGAGCATGACAAA] [+] EMBL BM615368 [CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAATGATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTCTAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGAAACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGCGATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAACAATGACAAAACATGTACTTTTAAAAAATCTGCTTCTGATGATGAAGAAGATATGGGCAATAACTCTGAGACATCAAATTCCGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACCAAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGCCAGAAAGAATCAAGCGATGTACTTGTACCGGGAAAAACTGAGGGTATTTGGTGAGTTACAGGCAAAGAAATTAGAGCATGACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5702#1 ------------------------------------------------------------ consensus_5702#2 CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAAT 60 consensus_5702#0 ------------------------------------------------------------ consensus_5702#1 ------------------------------------------------------------ consensus_5702#2 GATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTC 120 consensus_5702#0 -----------------------------------------------------------C 1 consensus_5702#1 --------------------------------CCGGGCC---GCTAATAAGCGGTTACGA 25 consensus_5702#2 TAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGA 180 consensus_5702#0 TGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGA 61 ** * *** ******* ** ** consensus_5702#1 AACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGC 85 consensus_5702#2 AACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGC 240 consensus_5702#0 AACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGC 121 *** ****** * ** *************** ****** **** **** ** ****** consensus_5702#1 AATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGA 145 consensus_5702#2 GATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAA 300 consensus_5702#0 GATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGA 181 ** ** ***** ** * *** ** ******* * *** ** * * *** * consensus_5702#1 GAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGA 205 consensus_5702#2 CAATGACAAAACATGTACTTTTAAAAAATCTG---------CTTCTGATGATG------A 345 consensus_5702#0 GAATGACAAAAGCTGTACCACGTATAATTCTGAATT---TGCTCCTGATGATG------A 232 ** ** *** ***** * ** **** ** ***** *** * consensus_5702#1 AGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTA 265 consensus_5702#2 AGAAGATATGGGCAATAACTCTGAGACATCAAATTC------------------------ 381 consensus_5702#0 AGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTC------------------------ 268 ****** *** * * **** ** **** ** ** consensus_5702#1 CGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGT 325 consensus_5702#2 ------------CGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACC 429 consensus_5702#0 ------------TGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGT 316 ** ****** ** ** * * ** *** *** * * * ** consensus_5702#1 AAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGAC---GACTAGC 382 consensus_5702#2 AAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGAC---GGCTGGC 486 consensus_5702#0 AAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAAC 376 ****** ******** ** ***** * * ****** **** ** ** ** * ** * consensus_5702#1 GAGAAAGAGTCAAGCGATATG--TCGGTATCGGAAAAAGCTG-----AGGCAATCTG--- 432 consensus_5702#2 CAGAAAGAATCAAGCGATGTA--CTTGTACCGGGAAAAACTG-----AGGGTATTTGGTG 539 consensus_5702#0 AGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCA 436 * * ** * * * * ** * ** * * * consensus_5702#1 ACTTGCCGGCAAAGAT-ATCAGGGAATGACAAAAGCTGTACCT-CATATAATTCTGAATT 490 consensus_5702#2 AGTTACAGGCAAAGAA-ATTAGAGCATGACAAA--------------------------- 571 consensus_5702#0 ACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGA 496 * ** * * ** * * ** **** consensus_5702#1 TGCTGCTTCTGATGATGAAGAAGATTTGG-----TCAATGACTCCGGGGCATCAAATTCG 545 consensus_5702#2 ------------------------------------------------------------ consensus_5702#0 AGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCC 556 consensus_5702#1 AAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACA 605 consensus_5702#2 ------------------------------------------------------------ consensus_5702#0 ACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTA 616 consensus_5702#1 AATC------------------------- 609 consensus_5702#2 ----------------------------- consensus_5702#0 CTTGTACCGGAAAAAACTCAGACTTACAT 645 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||