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Anopheles gambiae
cluster # 5707 cluster # 5707       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5707#0 length = 736 sequences # 3  
consensus_5707#1 length = 674 sequences # 1  

consensusID : consensus_5707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 736
fasta sequence
                              [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC]

[+] EMBL CNS09AD7             [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGC AAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC]
[+] EMBL BM605270             [ ccgATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTATGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAACCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGATTTGGACCACGGCTCACTGGATCGAAGCAACTGGAGGATGCGATCGACTTCGCAGTCCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM596646             [   ccgGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGC                                                                                                                                                       ]


>consensus_5707#0 CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAAT CAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAAT CGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGC GGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGG ATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACT CGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGC AGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGG AACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGA AAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGG CTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGC TGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAAC GCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGC CATGTTGCTCTTGCGC



consensusID : consensus_5707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT]

[+] EMBL BM606072             [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT]


>consensus_5707#1 CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAA TCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTG GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGG CAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTG GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTG AAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTG GCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG CTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA CGCTTGCATATGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5707#0      -CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAA 59
consensus_5707#1      CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAA 60
                       * *       *** ************************************** ******

consensus_5707#0      TCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 119
consensus_5707#1      TCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 120
                      ********************** *************************************

consensus_5707#0      TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 179
consensus_5707#1      TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 180
                      ************************************************************

consensus_5707#0      CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTG 239
consensus_5707#1      CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTG 240
                      ***************************************************** ******

consensus_5707#0      GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 299
consensus_5707#1      GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 300
                      ************************************************************

consensus_5707#0      TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGG 359
consensus_5707#1      TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGG 360
                      ************************************************* ** *******

consensus_5707#0      CAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTG 419
consensus_5707#1      CAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTG 420
                      ******************* ******** *******************************

consensus_5707#0      GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTG 479
consensus_5707#1      GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTG 480
                      ********************************** *************************

consensus_5707#0      AAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTG 539
consensus_5707#1      AAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTG 540
                      ************************* ************** *******************

consensus_5707#0      GCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 599
consensus_5707#1      GCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 600
                      ******* ****************************************************

consensus_5707#0      CTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 659
consensus_5707#1      CTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 660
                      ******* ****************************************************

consensus_5707#0      CGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATG 719
consensus_5707#1      CGCTTGCATATGAT---------------------------------------------- 674
                      ****** ***  **                                              

consensus_5707#0      CCATGTTGCTCTTGCGC 736
consensus_5707#1      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)