These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC] [+] EMBL CNS09AD7 [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGC AAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC] [+] EMBL BM605270 [ ccgATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTATGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAACCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGATTTGGACCACGGCTCACTGGATCGAAGCAACTGGAGGATGCGATCGACTTCGCAGTCCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGA ] [+] EMBL BM596646 [ ccgGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGC ] consensusID : consensus_5707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT] [+] EMBL BM606072 [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5707#0 -CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAA 59 consensus_5707#1 CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAA 60 * * *** ************************************** ****** consensus_5707#0 TCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 119 consensus_5707#1 TCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 120 ********************** ************************************* consensus_5707#0 TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 179 consensus_5707#1 TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 180 ************************************************************ consensus_5707#0 CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTG 239 consensus_5707#1 CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTG 240 ***************************************************** ****** consensus_5707#0 GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 299 consensus_5707#1 GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 300 ************************************************************ consensus_5707#0 TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGG 359 consensus_5707#1 TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGG 360 ************************************************* ** ******* consensus_5707#0 CAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTG 419 consensus_5707#1 CAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTG 420 ******************* ******** ******************************* consensus_5707#0 GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTG 479 consensus_5707#1 GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTG 480 ********************************** ************************* consensus_5707#0 AAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTG 539 consensus_5707#1 AAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTG 540 ************************* ************** ******************* consensus_5707#0 GCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 599 consensus_5707#1 GCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 600 ******* **************************************************** consensus_5707#0 CTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 659 consensus_5707#1 CTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 660 ******* **************************************************** consensus_5707#0 CGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATG 719 consensus_5707#1 CGCTTGCATATGAT---------------------------------------------- 674 ****** *** ** consensus_5707#0 CCATGTTGCTCTTGCGC 736 consensus_5707#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||