These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGTCTACCTCCCGAAAAACACGATCCCTCAGCAGTTGCGCATCGTAAAACAAGTGATTTTTTGTGTGTGTAAAGCTTAACAAATTCTAACCTGTGAAAATGCCGGCCGATATTCTTGGATTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCCGTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCCTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGAGATTGCGTACGGGGCAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGGGTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAAGTGACAAGAACGTCGAATCACGGTG] [+] EMBL BM597470 [CCGTCTACCTCCCGAAAAACACGATCCCTCAGCAGTTGCGCATCGTAAAACAAGTGATTTTTTGTGTGTGTAAAGCTTAACAAATTCTAACCTGTGAAAATGCCGGCCGATATTCTTGGATTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCCGTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCCTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGAGATTGCGTACGGGGCAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGGGTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAAGTGACAAGAACGTCGAATCACGGTG] consensusID : consensus_5716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 602 fasta sequence [GCAGTTGCGCACCGCAAAACAAGTGATTTTTTTGTGTGTAAAGCTTAACAAATTCTAAACTGTGAAAATGCCGGCCGATATTCTTGGATTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCCGTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCTTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGGAGAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGGGTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAGTGACAAGAACGTCGAATCACGGTGATGGGAATATAGCGATAAAATAAAAGTACTAGTA] [+] EMBL BX627377 [GCAGTTGCGCACCGCAAAACAAGTGATTTTTTTGTGTGTAAAGCTTAACAAATTCTAAACTGTGAAAATGCCGGCCGATATTCTTGGATTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCCGTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCTTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGGAGAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGGGTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAGTGACAAGAACGTCGAATCACG ] [+] EMBL BX614707 [ AGTTGCGCACCGCAAAACAAGTGATTTTTTTGTGTGTAAAGCTTAACAAATTCTAAACTGTGAAAATGCCGGCCGATATTCTTGGATTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCCGTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCTTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGGAGAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGGGTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAGTGACAAGAACGTCGAATCACGGTGATGGGAATATAGCGATAAAATAAAAGTACTAGTA] [+] EMBL BM624820 [ CGCACTGCTCGGGTACGGTGCGCTGCTGTCGTCTAACGAGCCGCCCCGGCCCCTGCTGCATATCGGCACGGCCCTGGTGCTGGCCGGTATGATGGGGTCGCGGTGGGCCCGCTCAGGCAAGTTCATGCCGCCGGGACTGATCTGCGTGCTGTCTTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATTGGCGCCAAGCAAGAGTAGGATAGGAGGTCGTTAAATTATGCATTTATGCAACGGGCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5716#0 CCGTCTACCTCCCGAAAAACACGATCCCTCAGCAGTTGCGCATCGTAAAACAAGTGATTT 60 consensus_5716#1 -------------------------------GCAGTTGCGCACCGCAAAACAAGTGATTT 29 *********** ** ************** consensus_5716#0 TTTGTGTGTGTAAAGCTTAACAAATTCTAACCTGTGAAAATGCCGGCCGATATTCTTGGA 120 consensus_5716#1 TTT-TGTGTGTAAAGCTTAACAAATTCTAAACTGTGAAAATGCCGGCCGATATTCTTGGA 88 *** ************************** ***************************** consensus_5716#0 TTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCC 180 consensus_5716#1 TTCGCTTACGCAGCAACGGTGGCCGCCGGTGGCATTGTCGGATACGCGAAAGCAGGTTCC 148 ************************************************************ consensus_5716#0 GTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTG 240 consensus_5716#1 GTCCCCTCGCTGGCAGCCGGTCTTACCTTCGGCGCACTGCTCGGGTACGGTGCGCTGCTG 208 ************************************************************ consensus_5716#0 TCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGT 300 consensus_5716#1 TCGTCGAACGAGCCGCCCCGGCCCCTGCTGCAGATCGGCACGGCCCTGGTGCTGGCCGGT 268 ************************************************************ consensus_5716#0 ATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTG 360 consensus_5716#1 ATGATGGGGTCGCGGTGGGCCCGCTCGGGCAAGTTCATGCCGCCGGGACTGATCTGCGTG 328 ************************************************************ consensus_5716#0 CTGTCCTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATT 420 consensus_5716#1 CTGTCTTGCGCAATGCTTGCCCGCGGTCTTATCTACCACAACCGCTATCTGCCGATGATT 388 ***** ****************************************************** consensus_5716#0 GGCGCCAAGCAAGAGTAGAGATTGCGTACGGGGCAGGAGGTCGTTAAATTATGCATTTAT 480 consensus_5716#1 GGCGCCAAGCAAGAGTAGGAG-------------AGGAGGTCGTTAAATTATGCATTTAT 435 ****************** ************************** consensus_5716#0 GCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGG 540 consensus_5716#1 GCAACGGGCGCTGTCGGACGGGCCGGCACTGATGCAATATTTCACCCAGCGCCCAATGGG 495 ************************************************************ consensus_5716#0 GTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAAAGTGACAAGAAC 600 consensus_5716#1 GTCGAAGGTTGTGTCGTGCCGTGGGTCGTGGAAGATAGCGTGCGCAAA-GTGACAAGAAC 554 ************************************************ *********** consensus_5716#0 GTCGAATCACGGTG---------------------------------- 614 consensus_5716#1 GTCGAATCACGGTGATGGGAATATAGCGATAAAATAAAAGTACTAGTA 602 ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||