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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1512 fasta sequence
[CCGAGGAAATCTCGATGCAGCTGCAGGAGTACCAGGACCTGATGGACATCAAGATTTCGCTCGACATGGAGATTGCCGCGTACGACAAGCTGCTCAGCTCGGAGGAGGACCGGCTGAAGATAACGCCCGGCAGCCAGACGTCCATCTTCTCGCAGTCGAGCATGTCGGGCAGCCTGTCGCGCAGCGGGGTGGTGCGCCGCACGCCCAGCCGTGCCGCGGCCAAGCGCAAGCGCACGGTGCTGGAGGAGTCGGACGAGCGCAGCGTGTCGGACTACTCCGTCACCTCGTCCGCTAAGGGCGACGTCGAGATCGTGGAGGTCGACCCGGAGGGCAAGTACGTGAAGCTGCACAACAAATCCGGCAAGGAAGTACAAATCGGTGGATGGACCGTGCTGCGGAAGGTGGGCAGCAACGAAACCGTGTTCAAATTCCACCGCTCGCTGAAGATGGACGGTGGCGCCTTTGTGACCGTTTGGTCGTCCGATCTGGGCAAGGATCACGAGCCGCCGACGACGATCGTGATGAAGGGGCAGAAGTGGTTCGCCGGTGACAACATGACTACGCATCTGCTGAATGCCGAAGGGGAGGAGGTAGCCGCCTCGGAGCGTGTGAAGCGAATGGTTTCGACTGCCGCCTCGCGCCACCGTGAATACCTCGGAAGCTACGGAGAGGAGCTTCACCATCAACAGGGTGAACCCCGGGGCGACGAGAAGTGCCGTATCATGTAATAGCACGCACGCACGGATCAACCAATCAACACAATATGGAAGCCACATGGAGCGTGCGCGTGTGGTGGAGTTAATATATAATTTTATCTCTTTAAACACTACACATATTTGTTCTGCCGCCGAACCTTCGCCCTTCTTCGGCCCGCGATGACGGCGACCTGGGAAAGGGAAGCGGGAGAAGCGGTGGCGGCGTATGTTGTAAGCGAATAATTTAAAAATTATCGCCCACAGCGGGGTAAAGCTGTGCGCACAATTGACATCCACAAAAACCAGAAAAGAACTCTATGATAGATAGGTATGTGTTTTGTTGTTTGCGTTCTTC-AAAACAAACGCAGGAAATCCGTATTAAGCCCAGAACTAGAAACGACGGAAACGCGTTGAGTCGTTTGTCTTGCATTTTTTTCCCTCTTATTTTATATTACACGTGTGAATACACACACGCAGCACTTTCTAACACACACTTCTTTCGGAAAAGGTAATACTATAAAATTTAGTACATCTTGTTCCCGTACGTGGACAGCAAGCAAGGAGGAGTAAGAAGTAATGCGTGACACGCGCGTCTGCGCTACAGAAAATTCAACTGTAAAAAAAATAATAATATTGAACAGAATTACTACTTACAGTTGTAATAATGTGCAAAATAACCTAAACAACATCACTGTGTTTTGGTTGTTTGTCCTTTTTCGTTCTAATTGTAACACGAGCGTAACTTTACAAATAAAATCAGTAACAACACCACCAGAGATAGAGAGAGAGAGAGAGAGAAAGATTATCTGTCAATCCA]
[+] EMBL BM597542 [CCGAGGAAATCTCGATGCAGCTGCAGGAGTACCAGGACCTGATGGACATCAAGATTTCGCTCGACATGGAGATTGCCGCGTACGACAAGCTGCTCAGCTCGGAGGAGGACCGGCTGAAGATAACGCCCGGCAGCCAGACGTCCATCTTCTCGCAGTCGAGCATGTCGGGCAGCCTGTCGCGCAGCGGGGTGGTGCGCCGCACGCCCAGCCGTGCCGCGGCCAAGCGCAAGCGCACGGTGCTGGAGGAGTCGGACGAGCGCAGCGTGTCGGACTACTCCGTCACCTCGTCCGCTAAGGGCGACGTCGAGATCGTGGAGGTCGACCCGGAGGGCAAGTACGTGAAGCTGCACAACAAATCCGGCAAGGAAGTACAAATCGGTGGATGGACCGTGCTGCGGAAGGTGGGCAGCAACGAAACCGTGTTCAAATTCCACCGCTCGCTGAAGATGGACGGTGGCGCCTTTGTGACCGTTTGGTCGTCCGATCTGGGCAAGGATCACGAGCCGCCGACGACGATCGTGATGAAGGGGCAGAAGTGGTTCGCCGGTGACAACATGACTACGCATCTGCTGAATGCCGAAGGGGAGGAGGTAGCCGCCTCGGAGCGTGTGAAGCGAATGGTTTCGACTGCCGCCTCGCGCCACCGTGAATACCTCGGAAGCTACGGAGA ]
[+] EMBL BX624088 [ GGGCAGCAACGAAACCGTGTTCAAATTCCACCGCTCGCTGAAGATGGACGGTGGCGCCTTTGTGACCGTTTGGTCGTCCGATCTGGGCAAGGATCACGAGCCGCCGACGACGATCGTGATGAAGGGGCAGAAGTGGTTCGCCGGTGACAACATGACTACGCATCTGCTGAATGCCGAAGGGGAGGAGGTAGCCGCCTCGGAGCGTGTGAAGCGAATGGTTTCGACTGCCGCCTCGCGCCACCGTGAATACCTCGGAAGCTACGGAGAGGAGCTTCACCATCAACAGGGTGAACCCCGGGGCGACGAGAAGTGCCGTATCATGTAATAGCACGCACGCACGGATCAACCAATCAACACAATATGGAAGCCACATGGAGCGTGCGCGTGTGGTGGAGTTAATATATAATTTTATCTCTTTAAACACTACACATATTTGTTCTGCCGCCGAACCTTCGCCCTTCTTCGGCCCGCGATGACGGCGACCTGGGAAAGGGAAGCGGGAGAAGCGGTGGCGGCGTATGTTGTAAGCGAATAATTTAAAAATTATCGCCCACAGCGGGGTAAAGCTGTGCGCACAATTGACATCCACAAAAACCAGAAAAGAACTCTATGATAGATAGGTATGTGTTTTGTTGTTTGCGTTCTTC AAAACAAACGCAGGAAATCCGTATTAAGCCCAGAACTAGAAACGACGG ]
[+] EMBL BM619029 [ ccgGCGGGGTAAAGCTGTGCGCACAATTGACATCCACAAAAACCAGAAAAGAACTCTATGATAGATAGGTATGTGTTTTGTTGTTTGCGTTCTTCAAAAACAAACGCAGGAAATCCGTATTAAGCCCAGAACTAGAAACGACGGAAACGCGTTGAGTCGTTTGTCTTGCATTTTTTTCCCTCTTATTTTATATTACACGTGTGAATACACACACGCAGCACTTTCTAACACACACTTCTTTCGGAAAAGGTAATACTATAAAATTTAGTACATCTTGTTCCCGTACGTGGACAGCAAGCAAGGAGGAGTAAGAAGTAATGCGTGACACGCGCGTCTGCGCTACAGAAAATTCAACTGTAAAAAAAATAATAATATTGAACAGAATTACTACTTACAGTTGTAATAATGTGCAAAATAACCTAAACAACATCACTGTGTTTTGGTTGTTTGTCCTTTTTCGTTCTAATTGTAACACGAGCGTAACTTTACAAATAAAATCAGTAACAACACCACCAGAGATAGAGAGAGAGAGAGAGAGAAAGATTATCTGTCAATCCA]
consensusID : consensus_5717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[CGTGACAAGCGCGTCTGCCTACAGAGAATTCAACTGTAAAAAATAATAATATTGGAACAGCAATTACTACTTACAGGTTGTAATAATGCTGCAAAATAACCTAAACAACATCACTGGTGTTTTGGTTGTTTGTCCCTTTTCGTTCTTATTGTAACACGAGCGTAACTTTACAAATAAAATCAGTAACAACACCACCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTC]
[+] EMBL CNS08ZGY [CGTGACAAGCGCGTCTGCCTACAGAGAATTCAACTGTAAAAAATAATAATATTGGAACAGCAATTACTACTTACAGGTTGTAATAATGCTGCAAAATAACCTAAACAACATCACTGGTGTTTTGGTTGTTTGTCCCTTTTCGTTCTTATTGTAACACGAGCGTAACTTTACAAATAAAATCAGTAACAACACCACCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5717#0 CCGAGGAAATCTCGATGCAGCTGCAGGAGTACCAGGACCTGATGGACATCAAGATTTCGC 60
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TCGACATGGAGATTGCCGCGTACGACAAGCTGCTCAGCTCGGAGGAGGACCGGCTGAAGA 120
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TAACGCCCGGCAGCCAGACGTCCATCTTCTCGCAGTCGAGCATGTCGGGCAGCCTGTCGC 180
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 GCAGCGGGGTGGTGCGCCGCACGCCCAGCCGTGCCGCGGCCAAGCGCAAGCGCACGGTGC 240
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TGGAGGAGTCGGACGAGCGCAGCGTGTCGGACTACTCCGTCACCTCGTCCGCTAAGGGCG 300
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 ACGTCGAGATCGTGGAGGTCGACCCGGAGGGCAAGTACGTGAAGCTGCACAACAAATCCG 360
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 GCAAGGAAGTACAAATCGGTGGATGGACCGTGCTGCGGAAGGTGGGCAGCAACGAAACCG 420
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TGTTCAAATTCCACCGCTCGCTGAAGATGGACGGTGGCGCCTTTGTGACCGTTTGGTCGT 480
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 CCGATCTGGGCAAGGATCACGAGCCGCCGACGACGATCGTGATGAAGGGGCAGAAGTGGT 540
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TCGCCGGTGACAACATGACTACGCATCTGCTGAATGCCGAAGGGGAGGAGGTAGCCGCCT 600
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 CGGAGCGTGTGAAGCGAATGGTTTCGACTGCCGCCTCGCGCCACCGTGAATACCTCGGAA 660
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 GCTACGGAGAGGAGCTTCACCATCAACAGGGTGAACCCCGGGGCGACGAGAAGTGCCGTA 720
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TCATGTAATAGCACGCACGCACGGATCAACCAATCAACACAATATGGAAGCCACATGGAG 780
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 CGTGCGCGTGTGGTGGAGTTAATATATAATTTTATCTCTTTAAACACTACACATATTTGT 840
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TCTGCCGCCGAACCTTCGCCCTTCTTCGGCCCGCGATGACGGCGACCTGGGAAAGGGAAG 900
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 CGGGAGAAGCGGTGGCGGCGTATGTTGTAAGCGAATAATTTAAAAATTATCGCCCACAGC 960
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 GGGGTAAAGCTGTGCGCACAATTGACATCCACAAAAACCAGAAAAGAACTCTATGATAGA 1020
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TAGGTATGTGTTTTGTTGTTTGCGTTCTTCAAAACAAACGCAGGAAATCCGTATTAAGCC 1080
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 CAGAACTAGAAACGACGGAAACGCGTTGAGTCGTTTGTCTTGCATTTTTTTCCCTCTTAT 1140
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 TTTATATTACACGTGTGAATACACACACGCAGCACTTTCTAACACACACTTCTTTCGGAA 1200
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 AAGGTAATACTATAAAATTTAGTACATCTTGTTCCCGTACGTGGACAGCAAGCAAGGAGG 1260
consensus_5717#1 ------------------------------------------------------------
consensus_5717#0 AGTAAGAAGTAATGCGTGACACGCGCGTCTGCGCTACAGAAAATTCAACTGTAAAAAAAA 1320
consensus_5717#1 --------------CGTGACAAGCGCGTCTGC-CTACAGAGAATTCAACTGTAAAAAA-- 43
******* ********** ******* *****************
consensus_5717#0 TAATAATATTG-AACAG-AATTACTACTTACAG-TTGTAATAATG-TGCAAAATAACCTA 1376
consensus_5717#1 TAATAATATTGGAACAGCAATTACTACTTACAGGTTGTAATAATGCTGCAAAATAACCTA 103
*********** ***** *************** *********** **************
consensus_5717#0 AACAACATCACTG-TGTTTTGGTTGTTTGTCCTTTTTCGTTCTAATTGTAACACGAGCGT 1435
consensus_5717#1 AACAACATCACTGGTGTTTTGGTTGTTTGTCCCTTTTCGTTCTTATTGTAACACGAGCGT 163
************* ****************** ********** ****************
consensus_5717#0 AACTTTACAAATAAAATCAGTAACAACACCACCAGAGATAGAGAGAGAGAGAGAGAGAAA 1495
consensus_5717#1 AACTTTACAAATAAAATCAGTAACAACACCACCAGAAAAAAAAAAAAAAAAAAAAAAAAA 223
************************************ * * * * * * * * * * ***
consensus_5717#0 GATTATCTGTCAATCCA 1512
consensus_5717#1 AAAAAGGCCCCATGTC- 239
* * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||