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Anopheles gambiae
cluster # 5720 cluster # 5720       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5720#0 length = 904 sequences # 2  
consensus_5720#1 length = 667 sequences # 2  

consensusID : consensus_5720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 904
fasta sequence
                              [CCGCGGACGCGTGGGCGG-ACGCGTGG-GCGACAGTGGCCAGTGATG-GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT-ACGGCGAAGCTGCAG-TACCTGAAGGACAC-GGGCATCGATGCGACGTGGCT-GAGTCCGATCTTTAG-CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC-GCCGATCTGGAGCAAC-TGTTTGCGGAGGCGAACAA-GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA-CCAGT-GGTTCATCGATTC-GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA]

[+] EMBL BM598477             [CCGCGGACGCGTGGGCGG ACGCGTGG GCGACAGTGGCCAGTGATG GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT ACGGCGAAGCTGCAG TACCTGAAGGACAC GGGCATCGATGCGACGTGGCT GAGTCCGATCTTTAG CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC GCCGATCTGGAGCAAC TGTTTGCGGAGGCGAACAA GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA CCAGT GGTTCATCGATTC GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATG                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX467549             [       gcaagaatCGGCACG NTGGCACGACAGTGG CAGTGATGNNGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGG CCTGTTCTACCAGATCTATCCCCGGTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTAACGGCGAAGCTGCAGTTACCTGAAGGACACGGGGCATCGATGCGACGTGGCTAGAGTCCGATCTTTAGACTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGGCCGATCTGGAGCAACGTGTTTGCGGAGGCGAACAAGGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAAGCATACGAGCAACAAGCAGCCAGTGGGTTCATCGATTCGGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCGCAGGAATGTGCANATGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA]


>consensus_5720#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGACAGTGGCCAGTGATGGGTGCGCGTTGGAAT TTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCT CAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCC TTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTACGGCGAAGCTGCAG TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG GAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT GCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNG GTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTT TTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCA AGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTC CCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGA TCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTC TAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNC GGAA



consensusID : consensus_5720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence
                              [CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG]

[+] EMBL CNS09BJ1             [CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTG                                                                                                                                                                                                                                                               ]
[-] EMBL CNS09BJ2             [                                                                                                                                                                                                                                   ACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCAACGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAAGTGCGCGGCGAGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG]


>consensus_5720#1 CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCG ATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTC GGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGC GGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAA CAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGT ATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGT GTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTGCACCAGTT CGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGA TGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCA CATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAG CTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGC GCACTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5720#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGACAGTGGCCAGTGATGGGTGCGCGTTGGAAT 60
consensus_5720#1      ------------------------------------------------------------
                                                                                  

consensus_5720#0      TTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCT 120
consensus_5720#1      ------------------------------------------------------------
                                                                                  

consensus_5720#0      CAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCC 180
consensus_5720#1      ------------------------------------------------------------
                                                                                  

consensus_5720#0      TTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTACGGCGAAGCTGCAG 240
consensus_5720#1      --------------------CGGGGTGGGAGATGTGCGGGGC-TTACGGCGAA-CTGCAG 38
                                          ********************** ********** ******

consensus_5720#0      TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 300
consensus_5720#1      TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 98
                      ************************************************************

consensus_5720#0      GAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 360
consensus_5720#1      -AAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 157
                       ***********************************************************

consensus_5720#0      GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 420
consensus_5720#1      GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 217
                      ************************************************************

consensus_5720#0      TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 480
consensus_5720#1      TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 277
                      ************************************************************

consensus_5720#0      GCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNG 540
consensus_5720#1      GCACCGTACCGGGACTATTACGTATGGCGCCCGGCC-AGGAATGTGAATG--GGCAGCG- 333
                      ************************************ *************  ******  

consensus_5720#0      GTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGG--GGCTCNGGGC 598
consensus_5720#1      -TATGCCACC--GAACAATTGGC--AATC------GGTGTTTTACGGCTCGGCTTGGGAG 382
                       *******    ****** ***   ***       ***  ** ****   ****  **  

consensus_5720#0      TTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGC--AA 656
consensus_5720#1      TGGAGCGAGCTGGGCGTCATGTACTATCT----GCACCAGTTCGCCAAAGGCCAGCCCGA 438
                      *   * **  * **   **    **  *     **   ****  * **      **   *

consensus_5720#0      CCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAA 716
consensus_5720#1      TCTGAACTATCG---CAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTG 495
                       *  *  *  **    **   ****  ** *    ***  *      *    * *  *  

consensus_5720#0      AGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAA 776
consensus_5720#1      GAT-----GGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAG 550
                        *     ** ** * *    *        ** * ** *  * *   **  * * ** * 

consensus_5720#0      TNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGG-GGAGCCGGCCAGGNNTGGACTG 835
consensus_5720#1      CATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGG-CTA 609
                            *  **    ** ***    *     * * ** *** ***  ***    ** ** 

consensus_5720#0      GAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTG 895
consensus_5720#1      CACGC---ACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTG 666
                       *  *    *    ** **  *  ** ** *    * *** *           *    **

consensus_5720#0      TTTNCGGAA 904
consensus_5720#1      G-------- 667
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)