These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence [CCGCGGACGCGTGGGCGG-ACGCGTGG-GCGACAGTGGCCAGTGATG-GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT-ACGGCGAAGCTGCAG-TACCTGAAGGACAC-GGGCATCGATGCGACGTGGCT-GAGTCCGATCTTTAG-CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC-GCCGATCTGGAGCAAC-TGTTTGCGGAGGCGAACAA-GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA-CCAGT-GGTTCATCGATTC-GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA] [+] EMBL BM598477 [CCGCGGACGCGTGGGCGG ACGCGTGG GCGACAGTGGCCAGTGATG GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT ACGGCGAAGCTGCAG TACCTGAAGGACAC GGGCATCGATGCGACGTGGCT GAGTCCGATCTTTAG CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC GCCGATCTGGAGCAAC TGTTTGCGGAGGCGAACAA GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA CCAGT GGTTCATCGATTC GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATG ] [+] EMBL BX467549 [ gcaagaatCGGCACG NTGGCACGACAGTGG CAGTGATGNNGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGG CCTGTTCTACCAGATCTATCCCCGGTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTAACGGCGAAGCTGCAGTTACCTGAAGGACACGGGGCATCGATGCGACGTGGCTAGAGTCCGATCTTTAGACTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGGCCGATCTGGAGCAACGTGTTTGCGGAGGCGAACAAGGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAAGCATACGAGCAACAAGCAGCCAGTGGGTTCATCGATTCGGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCGCAGGAATGTGCANATGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA] consensusID : consensus_5720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG] [+] EMBL CNS09BJ1 [CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTG ] [-] EMBL CNS09BJ2 [ ACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCAACGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAAGTGCGCGGCGAGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5720#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGACAGTGGCCAGTGATGGGTGCGCGTTGGAAT 60 consensus_5720#1 ------------------------------------------------------------ consensus_5720#0 TTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCT 120 consensus_5720#1 ------------------------------------------------------------ consensus_5720#0 CAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCC 180 consensus_5720#1 ------------------------------------------------------------ consensus_5720#0 TTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTACGGCGAAGCTGCAG 240 consensus_5720#1 --------------------CGGGGTGGGAGATGTGCGGGGC-TTACGGCGAA-CTGCAG 38 ********************** ********** ****** consensus_5720#0 TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 300 consensus_5720#1 TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 98 ************************************************************ consensus_5720#0 GAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 360 consensus_5720#1 -AAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 157 *********************************************************** consensus_5720#0 GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 420 consensus_5720#1 GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 217 ************************************************************ consensus_5720#0 TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 480 consensus_5720#1 TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 277 ************************************************************ consensus_5720#0 GCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNG 540 consensus_5720#1 GCACCGTACCGGGACTATTACGTATGGCGCCCGGCC-AGGAATGTGAATG--GGCAGCG- 333 ************************************ ************* ****** consensus_5720#0 GTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGG--GGCTCNGGGC 598 consensus_5720#1 -TATGCCACC--GAACAATTGGC--AATC------GGTGTTTTACGGCTCGGCTTGGGAG 382 ******* ****** *** *** *** ** **** **** ** consensus_5720#0 TTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGC--AA 656 consensus_5720#1 TGGAGCGAGCTGGGCGTCATGTACTATCT----GCACCAGTTCGCCAAAGGCCAGCCCGA 438 * * ** * ** ** ** * ** **** * ** ** * consensus_5720#0 CCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAA 716 consensus_5720#1 TCTGAACTATCG---CAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTG 495 * * * ** ** **** ** * *** * * * * * consensus_5720#0 AGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAA 776 consensus_5720#1 GAT-----GGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAG 550 * ** ** * * * ** * ** * * * ** * * ** * consensus_5720#0 TNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGG-GGAGCCGGCCAGGNNTGGACTG 835 consensus_5720#1 CATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGG-CTA 609 * ** ** *** * * * ** *** *** *** ** ** consensus_5720#0 GAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTG 895 consensus_5720#1 CACGC---ACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTG 666 * * * ** ** * ** ** * * *** * * ** consensus_5720#0 TTTNCGGAA 904 consensus_5720#1 G-------- 667 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||