These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCGCCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACCAGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACGAACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCTTCATGAATGGGGAGGGGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACACATTTTCCTCTAATTGCCATTGAAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAATAAGACNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCGAGAACAAAGGTTNGCAATTGGGAAGAAANGGCANAGAAGGGCAAAGGTAGGAAGTCAAGTATTGGCTTTAACTGGCCGTTAT] [+] EMBL BX467190 [GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCGCCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACCAGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACGAACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCTTCATGAATGGGGAGGGGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACACATTTTCCTCTAATTGCCATTGAAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAATAAGACNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCGAGAACAAAGGTTNGCAATTGGGAAGAAANGGCANAGAAGGGCAAAGGTAGGAAGTCAAGTATTGGCTTTAACTGGCCGTTAT] consensusID : consensus_5722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [CCGCGGACGCGTGGGAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACATAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATACACACTCATTAAAAAAAGAAAGAGAAGAG---AAAAAACTACTGAACGATCTGTGAAAAGAAAAAAA-AAAGTTCTAATTCATACTCTACAGAATCG-CCCGACACGGAAACACATAATGCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT] [+] EMBL BM598516 [CCGCGGACGCGTGGGAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACATAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATACACACTCATTAAAAAAAGAAAGAGAAGAG AAAAAACTACTGAACGATCTGTGAAAAGAAAAAAA AAAGTTCTAATTCATACTCTACAGAATCG CCCGACACGGAAACACATAATGCATGCTACAATAA ] [-] EMBL BM657093 [ AAGCGATTCAAATAGGAAGGAAAGGAAATAAACCATTATCGAATCCCCATAAGATTGATCGGCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATCCCCACTCATTAAAAAAAGAAAGAGAAGAGAAAAAAAAACTACTGAACGATCTGTGAAAAGAAAAAAATAATGTTCTAATTCATACTCTACAGAATCGCCCCGATACGGAAACACATAATGCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT] consensusID : consensus_5722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [CTGCAGAATCGNCCACGAGGTGGTGGCTTCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAACAAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTNGAGAAGCGATTCAANATAGGAAGGAAAGGAAATAAAACATTATCGA] [+] EMBL BX469750 [CTGCAGAATCGNCCACGAGGTGGTGGCTTCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAACAAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTNGAGAAGCGATTCAANATAGGAAGGAAAGGAAATAAAACATTATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5722#0 GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCG 60 consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 ------------------------------------------------------------ consensus_5722#0 CCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACC 120 consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 ------------------------------------------------------------ consensus_5722#0 AGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACG 180 consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 ------------------------------------------------------------ consensus_5722#0 AACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCT 240 consensus_5722#2 ----------------------------CTGCAGAATC----GNCCACGAGGTGGTGGCT 28 consensus_5722#1 ------------------------------------------------------------ consensus_5722#0 TCATGAATGGGGAGGGG--GGGAAAATACAGGTTTAAATCCTGATACGCT--AAAGGAAA 296 consensus_5722#2 TCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCT--AAAGGAAA 86 consensus_5722#1 -------------------------------------CCGCGGACGCGTGGGAAAGGAAA 23 * ** ** ******** consensus_5722#0 TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 356 consensus_5722#2 TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 146 consensus_5722#1 TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 83 ************************************************************ consensus_5722#0 ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 416 consensus_5722#2 ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 206 consensus_5722#1 ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 143 ************************************************************ consensus_5722#0 GCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 476 consensus_5722#2 GCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 266 consensus_5722#1 GCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 203 **** ******************************************************* consensus_5722#0 ACTAAGCATGATGAAA-CACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGA 535 consensus_5722#2 ACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAA-CAAAAA 325 consensus_5722#1 ACTAAGCATGATGAAA-CACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAA-A 261 **************** ********************************** * **** * consensus_5722#0 CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACA-CATTTTCCTCTAATTGCCATTG 594 consensus_5722#2 CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAAT-GCCATTG 384 consensus_5722#1 CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAAT-GCCATTG 320 ************************************* ************** ******* consensus_5722#0 AAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAAT----- 649 consensus_5722#2 AA----TAGTNGAGAAGCGA---TTCAANAT------AGGAAGGAAAGGAAATAA----- 426 consensus_5722#1 AA-TAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACA 379 ** *** * * * * * consensus_5722#0 -AAGA-CNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCG--AGAACAAAG 705 consensus_5722#2 -AACA-TTATCGA----------------------------------------------- 437 consensus_5722#1 TAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAG 439 ** * ** consensus_5722#0 GTTNGCAATTGGGAAGAAANGGCANAG--AAGGGCAAAGGTAGGAAGTCAAGTATTGGCT 763 consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 TTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAG 499 consensus_5722#0 TTAACTGGCCGTTAT--------------------------------------------- 778 consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 CACATACACACTCATTAAAAAAAGAAAGAGAAGAGAAAAAACTACTGAACGATCTGTGAA 559 consensus_5722#0 ------------------------------------------------------------ consensus_5722#2 ------------------------------------------------------------ consensus_5722#1 AAGAAAAAAAAAAGTTCTAATTCATACTCTACAGAATCGCCCGACACGGAAACACATAAT 619 consensus_5722#0 ---------------------------------------------- consensus_5722#2 ---------------------------------------------- consensus_5722#1 GCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT 665 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||