These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 838 fasta sequence [CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGATTGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGTCACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCTG] [+] EMBL BM638184 [CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGATTGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGTCACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATAT ] [+] EMBL BM599191 [ CCGGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCTG] consensusID : consensus_5725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CCGCCATCCTGTCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGTGTCGTTCGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGTCTGTTTTCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTT] [+] EMBL BM603197 [CCGCCATCCTGTCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGTGTCGTTCGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGTCTGTTTTCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTT] consensusID : consensus_5725#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [TCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTCTGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT] [+] EMBL BX619235 [TCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTCTGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5725#0 CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGAT 60 consensus_5725#2 ------------------------------------------------------------ consensus_5725#1 ------------------------------------------------------------ consensus_5725#0 TGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGT 120 consensus_5725#2 ------------------------------------------------------------ consensus_5725#1 ------------------------------------------------------------ consensus_5725#0 CACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTC 180 consensus_5725#2 ------------------------------------------------------------ consensus_5725#1 ------------------------------------------------------------ consensus_5725#0 GGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGT 240 consensus_5725#2 ------------------------------------------------------------ consensus_5725#1 ---------CCGCCATCCTGTCAT-CCCACGGTCCCGTGCG--TGGGATTTCCAGTGCAC 48 consensus_5725#0 GTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGT-TCCTGATGTACTTCTTCCTCA 299 consensus_5725#2 ------------------------------------------------------------ consensus_5725#1 GCCGGTGGAAGATCCGA------GAGCGATCCTGGTATATCCTGAACCACATCTACGCCA 102 consensus_5725#0 TCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCAC 359 consensus_5725#2 ---------------------TCATCCCACGGTCCCGTGCGTGGGATTT--CCAGTGCAC 37 consensus_5725#1 TCACCGTCGCAGTGACGTTAACGACCATGGT-TTACATTTATCACAGCCGGTATCCG-AC 160 * * * * ** consensus_5725#0 GCCGGTGGAAGATCCGAGAGCGATCCTG-GTATATCCTGAACCACATCTACGCCATCACC 418 consensus_5725#2 GCCGGTGGAAGATCCGAGAGCGATCCTG-GTATATCCTGAACCACATCTACGCCATCACC 96 consensus_5725#1 GCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGT 220 ** ** *** * * * *** ** * * ** * * * * consensus_5725#0 GTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGT 478 consensus_5725#2 GTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGT 156 consensus_5725#1 GTCGTT-CGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGT-CTGTTT 278 **** * * * ** * ** ** * * * *** * consensus_5725#0 GAAATCTCCTGCTGGT-TCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 537 consensus_5725#2 GAAATCTCCTGCTGGT-TCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 215 consensus_5725#1 TCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 338 * ****** * * * ************************************* consensus_5725#0 GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 597 consensus_5725#2 GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 275 consensus_5725#1 GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 398 ************************************************************ consensus_5725#0 GAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATA 657 consensus_5725#2 GAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTA 335 consensus_5725#1 GAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTA 458 ********************* *********************************** ** consensus_5725#0 TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 717 consensus_5725#2 TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 395 consensus_5725#1 TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 518 ************************************************************ consensus_5725#0 GAGCGAAGGTCTGGTGCCCCAGTCCTGG-TTTTGGATCATCGTCGACGCGGTCAACTGTC 776 consensus_5725#2 GAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTC 455 consensus_5725#1 GAGCGAAGGTCTGGTGCCCCAGTCCTGG-TTTTGGATCATCGTCGACGCGGTCAACTGTC 577 **************************** ******************** ********** consensus_5725#0 TGCACGGGGTGCTCATCTTC-TTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAG 835 consensus_5725#2 TGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAG 515 consensus_5725#1 TGCACGGGGTGCTCATCTTCTT-------------------------------------- 599 ***** *********** * consensus_5725#0 CTG------------------------------------------- 838 consensus_5725#2 CNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT 561 consensus_5725#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||