These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1498 fasta sequence [GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGACTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGGTCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGAGAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTGACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGACTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAACAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTTCC--TTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGG-AAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACCAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCAAAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTATTATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAAAAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC] [+] EMBL BM646371 [GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGACTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGGTCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGAGAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTGACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGACTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAACAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTTCCTTTTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTAC ] [+] EMBL BM640250 [ ccgCAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAAAGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGGTTATGGGTGGAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTCCC TTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGG AAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACCAAA ] [+] EMBL BX621443 [ GAGACAGAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTT GGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTAAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATT CAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCAAAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTATTATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAAAAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC] consensusID : consensus_5735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAAACGGAAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCAGAATAAATGTACTAGCAAACCCTAAAACGCAAAAGAAAAAGGTGCGAAAGCAAACCATCCCAAGTTACAAAAATTCCCGTTAAACGCAAGCAA] [+] EMBL BM601390 [CCGCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAAACGGAAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCAGAATAAATGTACTAGCAAACCCTAAAACGCAAAAGAAAAAGGTGCGAAAGCAAACCATCCCAAGTTACAAAAATTCCCGTTAAACGCAAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5735#0 GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGA 60 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 CTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGG 120 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 TCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGA 180 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 GAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTG 240 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 ACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGA 300 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 CTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAAC 360 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 AAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGAC 420 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 CGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAA 480 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 ATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAG 540 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 GGGTTGAATGTACAAATCTTAGCTTTTTCCTTTTTTTGTTTCTTCAAACGCCCATCGTTA 600 consensus_5735#1 -----------------------------------------CCGCAAACGCCCATCGTTA 19 * **************** consensus_5735#0 GTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATC 660 consensus_5735#1 GTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATC 79 ***************************************** ****************** consensus_5735#0 TTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGT 720 consensus_5735#1 TTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGT 139 ************************************************************ consensus_5735#0 TTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAA 780 consensus_5735#1 TTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAA 199 ************************************************************ consensus_5735#0 CCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTC 840 consensus_5735#1 CCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTC 259 ************************************************************ consensus_5735#0 ATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGA 900 consensus_5735#1 ATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGA 319 ************************************************************ consensus_5735#0 GGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGG 960 consensus_5735#1 GGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTC-AAACGAAGTGATAGAAAACGG 378 ************************************** ********************* consensus_5735#0 AAACATTCACACACAACAACAAAAAAAAA--CAAACCACAAAAAAGCAAACAACCAAATT 1018 consensus_5735#1 AAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATT 438 ******** *** **************** *********************** ***** consensus_5735#0 ACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAAC 1078 consensus_5735#1 ACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAAC 498 ************************************************************ consensus_5735#0 TCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCA 1138 consensus_5735#1 TCTTTTTAAAAGAACTAACACAAGCAAGCAGA---ATAAATGTACTAGCAAACCC----- 550 ***************************** * * * * ** * consensus_5735#0 AAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTAT 1198 consensus_5735#1 ---TAAAACGCAAAAGAAAAAGGTGCGAAAGCAAAC--CATCCCAAGTTACAAAAATTCC 605 **** * *** ****** * * *** **** * * ** * * ** **** consensus_5735#0 TATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAA 1258 consensus_5735#1 CGTTA-AACGC-AAGCAA------------------------------------------ 621 * * ***** ** ** consensus_5735#0 AAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAA 1318 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 ATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAA 1378 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 AATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTA 1438 consensus_5735#1 ------------------------------------------------------------ consensus_5735#0 GAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC 1498 consensus_5735#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||