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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1498 fasta sequence
[GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGACTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGGTCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGAGAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTGACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGACTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAACAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTTCC--TTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGG-AAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACCAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCAAAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTATTATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAAAAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC]
[+] EMBL BM646371 [GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGACTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGGTCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGAGAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTGACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGACTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAACAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTTCCTTTTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTAC ]
[+] EMBL BM640250 [ ccgCAAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGACCGGAAGGGTATATATAAAAGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAAATCAAATTGGCAACGGGAGCGGTTATGGGTGGAATCTGTGGACGGTGAAAGGCAGGGCAGGGGTTGAATGTACAAATCTTAGCTTTTCCC TTTTTTTGTTTCTTCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGG AAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACCAAA ]
[+] EMBL BX621443 [ GAGACAGAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTT GGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTAAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATT CAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCAAAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTATTATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAAAAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC]
consensusID : consensus_5735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAAACGGAAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCAGAATAAATGTACTAGCAAACCCTAAAACGCAAAAGAAAAAGGTGCGAAAGCAAACCATCCCAAGTTACAAAAATTCCCGTTAAACGCAAGCAA]
[+] EMBL BM601390 [CCGCAAACGCCCATCGTTAGTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATCTTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGTTTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAACCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTCATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGAGGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAAAACGGAAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAACTCTTTTTAAAAGAACTAACACAAGCAAGCAGAATAAATGTACTAGCAAACCCTAAAACGCAAAAGAAAAAGGTGCGAAAGCAAACCATCCCAAGTTACAAAAATTCCCGTTAAACGCAAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5735#0 GACCCACGCGTCCGCGTACGTTGTGTTCATCGCAGCGCCGCTGCTGCAAAACATTGCCGA 60
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 CTACGACGGTAGTCTCGAGCGGCTCGCCAAAGAGTCCGACATGCTGCGCCAGGCGTACGG 120
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 TCACTTCTTCGATCTGACCATCGTCAACAACGACATCGGCGAGACGATAGCGACGCTGGA 180
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 GAACGCTATCGACAAGGTGCATTCGACCGCCCAGTGGGTCCCGGTGTCCTGGCTGTACTG 240
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 ACAAGATAGTGAGCTAGAATGTCCCGCCTGTTTGGAGGATGAGTGCGATTGCGAATGTGA 300
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 CTGCGAGCTGGATCTGAAGTGAAACCGGAAACAGGGCGCAAATTAAAAACAAAACAAAAC 360
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 AAAGCTACACCGTTTCAAAGGCACAAACAACAAACTGCTACTGCTGGTGGGGGCACCGAC 420
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 CGGAAGGGTATATATAAATGGTACCAAACGACGGTTCATAGTGTTTTAGTAACGAATCAA 480
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 ATCAAATTGGCAACGGGAGCGATTATGGGTGAAATCTGTGGACGGTGAAAGGCAGGGCAG 540
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 GGGTTGAATGTACAAATCTTAGCTTTTTCCTTTTTTTGTTTCTTCAAACGCCCATCGTTA 600
consensus_5735#1 -----------------------------------------CCGCAAACGCCCATCGTTA 19
* ****************
consensus_5735#0 GTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGTGGAACTGGTTCTTTAATC 660
consensus_5735#1 GTTACGTTATTCCAAAGAGCATTTTTATAGTAAATATCTAGGGGAACTGGTTCTTTAATC 79
***************************************** ******************
consensus_5735#0 TTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGT 720
consensus_5735#1 TTTGTCTTCGAGGTAAGTGTTATGTTTTTTTTAATCGTTGTACACATATTCATGATGGGT 139
************************************************************
consensus_5735#0 TTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAA 780
consensus_5735#1 TTTGTAAGGGAAAGCGATAGTTCCATTGTTCCGTAGCAAATTTTGAGACAAAATCAACAA 199
************************************************************
consensus_5735#0 CCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTC 840
consensus_5735#1 CCTTGTGTTTAATTTGCAACAACGTGAAAACCCCTCTACTTTGTTTTCTGATACGTTGTC 259
************************************************************
consensus_5735#0 ATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGA 900
consensus_5735#1 ATGCGCGTTTCTACCCGACAGGTCGGTTCTCTTAGTCGGTACCCGACGCGGAAAGAAGGA 319
************************************************************
consensus_5735#0 GGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCCAAACGAAGTGATAGAAAACGG 960
consensus_5735#1 GGAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTC-AAACGAAGTGATAGAAAACGG 378
************************************** *********************
consensus_5735#0 AAACATTCACACACAACAACAAAAAAAAA--CAAACCACAAAAAAGCAAACAACCAAATT 1018
consensus_5735#1 AAACATTCGCACGCAACAACAAAAAAAAAAACAAACCACAAAAAAGCAAACAACAAAATT 438
******** *** **************** *********************** *****
consensus_5735#0 ACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAAC 1078
consensus_5735#1 ACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTAGAAC 498
************************************************************
consensus_5735#0 TCTTTTTAAAAGAACTAACACAAGCAAGCTTACTTGTGCTTATTTCCTTAATCTTAACCA 1138
consensus_5735#1 TCTTTTTAAAAGAACTAACACAAGCAAGCAGA---ATAAATGTACTAGCAAACCC----- 550
***************************** * * * * ** *
consensus_5735#0 AAATAAACTGAAAATGAAAAAAGAGGAAAAACAAATGTTAACATAATTCATAATAATTAT 1198
consensus_5735#1 ---TAAAACGCAAAAGAAAAAGGTGCGAAAGCAAAC--CATCCCAAGTTACAAAAATTCC 605
**** * *** ****** * * *** **** * * ** * * ** ****
consensus_5735#0 TATAATAACGCTAAATAATAATAATAATAATAATAATAATGAACGAAATGAAAACAAAAA 1258
consensus_5735#1 CGTTA-AACGC-AAGCAA------------------------------------------ 621
* * ***** ** **
consensus_5735#0 AAGAGGAAAAAAAAATAAAAGAAAAAACCAAACCAAAAAAATTCAAACGAAGTGATAGAA 1318
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 ATCGGAAACATTCACACACAACAACAAAAAAAAAACAAACCACAAAAAAGCAAACAACAA 1378
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 AATTACTGCAAAGGAGTATAATTATAAAGATAATAATTAAAGCGTACACGAAACAAACTA 1438
consensus_5735#1 ------------------------------------------------------------
consensus_5735#0 GAACTCTTTTTAAAGAACTAACCNAGCAAGCTTACTTGNGCTTATTTCCTTAATCTTAAC 1498
consensus_5735#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||