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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1267 fasta sequence
[CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCTCGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGGCGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTCTCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATTGAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTGTAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCTTTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGCTTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCTCGGGTTCC]
[+] EMBL BM627566 [CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCTCGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTA ]
[+] EMBL BM601730 [ cCGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGGCGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTCTCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATTGAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTGTAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCTTTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGCTTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCTCGGGTTCC]
consensusID : consensus_5741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[GACCCACGCGTCCGGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAATAACGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAAGCCACGCGTGCATACATACAGAGACACAGTAATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCGACAAGGATTGCATTTCGCTGCGCTCTTGCTTCAAGAG]
[+] EMBL BM622731 [GACCCACGCGTCCGGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAATAACGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAAGCCACGCGTGCATACATACAGAGACACAGTAATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCGACAAGGATTGCATTTCGCTGCGCTCTTGCTTCAAGAG]
consensusID : consensus_5741#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGGTAAGAGACAATCACCAATTTCCCAGTACACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACTCTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATCTCTGGAACTACTAGTCCTCTTCTGCTTCACTAGTCGGCTAATACTTTAACACATG]
[+] EMBL BM653449 [CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGGTAAGAGACAATCACCAATTTCCCAGTACACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACTCTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATCTCTGGAACTACTAGTCCTCTTCTGCTTCACTAGTCGGCTAATACTTTAACACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5741#0 CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGT 60
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCC 120
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGAC 180
consensus_5741#1 -------GACCCACGCGTCCG--GCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGAC 51
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 GATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCC 240
consensus_5741#1 GATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCC 111
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 CGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATG 300
consensus_5741#1 CGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATG 171
consensus_5741#2 ------CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGT-CGGCGCCATGTTCTCGGTG 53
** *** ** ** * ** * ** ** * *** ** * ** **
consensus_5741#0 CCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCG 360
consensus_5741#1 CCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCG 231
consensus_5741#2 CGGGCG-AAC--ATTTACGCGACGTATGCG-CTAATCTTTTTCGGCGAACTTG-----CC 104
* * ** *** ** * ** *** * **** * ** * *** * *
consensus_5741#0 TCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGG 420
consensus_5741#1 TCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGG 291
consensus_5741#2 CTCAATCTCAATTGGGCGA----TCG-TAGCGGACATTCTGCTGGT-AAGAGACAATCAC 158
* ** ** *** *** *** * ** *** **** ** ** * *
consensus_5741#0 CAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCT 480
consensus_5741#1 CAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCT 351
consensus_5741#2 CA----ATTTCCCAGTA-CACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACT 213
** *** ** * * *** * * * * * * * * **
consensus_5741#0 TCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATC 540
consensus_5741#1 TCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATC 411
consensus_5741#2 CTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATC--TCTGGAACTACTAGTCCT 271
**** * ** **** * * ** * *** * * * *
consensus_5741#0 GGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCT 600
consensus_5741#1 GGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAAT-------AACGCTTCGGC- 463
consensus_5741#2 ---CTTCTGCTTCACTAGTCG-GCTAA-TACTTTAACACATG------------------ 308
* * * ** * **** * * *
consensus_5741#0 CGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCG-GCGGTCCCGCCGGCAGT 659
consensus_5741#1 ------GCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAA- 516
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 ACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGG 719
consensus_5741#1 GCACAAGGCAATAA-AGCCACGCGTGCATACATACAGAGAC----ACAGTAATATCAGGA 571
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 CGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTC 779
consensus_5741#1 AGAACGCAAAGGCTT----TCATCCCGC--GTTGCGAAGGTTGGTCGACAAGGATTGCA- 624
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATT 839
consensus_5741#1 TTTCGCTGCGCT---CTTGCTTCAAGAG-------------------------------- 649
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 GAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTG 899
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCT 959
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCA 1019
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 GCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATA 1079
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 AGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGG 1139
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 CTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGC 1199
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 TTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCT 1259
consensus_5741#1 ------------------------------------------------------------
consensus_5741#2 ------------------------------------------------------------
consensus_5741#0 CGGGTTCC 1267
consensus_5741#1 --------
consensus_5741#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||