These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1059 fasta sequence [CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGGACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAACCACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAACGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAA--ATAGACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCT--TCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTATTCATACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAAAAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATGTGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGCCAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA] [+] EMBL BM621953 [CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGGACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAACCACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAACGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCCAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCC CCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCC ] [+] EMBL BX623276 [ AATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCNCCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCATCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAA ATAGACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCT TCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTAT ] [+] EMBL BX625442 [ ATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGAC CTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAACACACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCG CCTGTTTCAGCTTCTCCCTCGTTTCGACAACCCGCCATCCTCCTTCTCCTCCTTACACCATCGACGATCGGTCTTGTGTTTCTGCGCTACTATTCATACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAAAAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATGTGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGCCAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA] consensusID : consensus_5744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAATAGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCTCCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCATACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAAGAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATGTGCCGGCCATACATGGCATTGTTGCAAAATTAGATACACTGATAGGACAAACGGACGGCAAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATGAAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGTGTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAATTATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCTTCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG] [+] EMBL BM601831 [CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAATAGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCTCCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCATACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAAGAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATGTGCCGGCCATACATGGCATTGTTGCAAAATTAGATACACTGATAGGACAAACGGACGGCAAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATGAAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGTGTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAATTATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCTTCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5744#0 CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGG 60 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 ACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAAC 120 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 CACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAA 180 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 CGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGG 240 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 TACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCG 300 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 GCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATT 360 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 TGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGG 420 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 CCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGA 480 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 CGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTA 540 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 AGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTG 600 consensus_5744#1 ------------------------------------------------------------ consensus_5744#0 CTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAAT 660 consensus_5744#1 --------------------CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAAT 40 ************************************* consensus_5744#0 AGACACACACAC--CCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAA 718 consensus_5744#1 AGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAA 100 ************ ********************************************** consensus_5744#0 AAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGA 778 consensus_5744#1 AAGCAAATGAAATCCTCCTCCAGCGCC-TGTTTCAGCTTCTCACTCGGCTCGACCACCGA 159 ************************* * ******************************** consensus_5744#0 CCTTCCTCCTTCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTATTCA 838 consensus_5744#1 CCTTCCTCCT-CCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCA 218 ********** ********************** ************************** consensus_5744#0 TACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAA 898 consensus_5744#1 TACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAA 278 *** ***** ****** ************** ************** *********** consensus_5744#0 AAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATG 958 consensus_5744#1 GAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATG 338 ********************* ** ********** * ******************** consensus_5744#0 TGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGC 1018 consensus_5744#1 TGCCGGCCATACATGGCATTGTTGCAAAAT-TAGATACACTGATAGGACAAACGGACGGC 397 **** ** ********************* ******* * ** ************** consensus_5744#0 CAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA------------------- 1059 consensus_5744#1 -AAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATG 456 *********** ************** ** ********* consensus_5744#0 ------------------------------------------------------------ consensus_5744#1 AAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGT 516 consensus_5744#0 ------------------------------------------------------------ consensus_5744#1 GTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAAT 576 consensus_5744#0 ------------------------------------------------------------ consensus_5744#1 TATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCT 636 consensus_5744#0 ----------------------------------- consensus_5744#1 TCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG 671 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||