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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[AGGCAAAAAAGAAAACAAACAAACAAACAAACAAACACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTATCTCTCTGCGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGAGAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTGTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATAGGTCGCGACAAGACCGTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAAAAAAGGCCACATGTGCCCGAG]
[+] EMBL CNS08F9D [AGGCAAAAAAGAAAACAAACAAACAAACAAACAAACACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTATCTCTCTGCGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGAGAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTGTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATAGGTCGCGACAAGACCGTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAAAAAAGGCCACATGTGCCCGAG]
consensusID : consensus_5749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[GGCGGGGGAATTCCTCGGGAACTGTTGGCCTGCTGGATGCTTTATGTAAAACAAACAAACAAACAAACAAAAACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTTTCTCTCTGCGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGTGAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGAGAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATCGGTCGCGCCGCCCCCCGTTGTGCTCTCT]
[-] EMBL CNS08F9E [GGCGGGGGAATTCCTCGGGAACTGTTGGCCTGCTGGATGCTTTATGTAAAACAAACAAACAAACAAACAAAAACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTTTCTCTCTGCGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGTGAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGAGAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATCGGTCGCGCCGCCCCCCGTTGTGCTCTCT]
consensusID : consensus_5749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCATACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATTTTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCGAGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAGAGAGATGCGTTACAAAAGCTAGGAGATACATATGTATGTTGTGAAACAATTAGTGGAACCACTTTGTGATACATATATGAATTATATTTACAGATACATATTACTATTCGATGATTGTTGGGAAAAAAACACAGGTTATACAGGCGAATTGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAAAATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTATAGAGAGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTCGGTGGGTGGGTGTG]
[+] EMBL BM618019 [CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCATACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATTTTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCGAGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAGAGAGATGCGTTACAAAAGCTAGGAGATACATATGTATGTTGTGAAACAATTAGTGGAACCACTTTGTGATACATATATGAATTATATTTACAGATACATATTACTATTCGATGATTGTTGGGAAAAAAACACAGGTTATACAGGCGAATTGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAAAATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTATAGAGAGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTCGGTGGGTGGGTGTG]
consensusID : consensus_5749#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CCGGCATCAGTAGCGCGCTTATCCTTTATCTCTCTGCGCAAACACACACACAGCCACACTTTGAGTGAAGGATAGGAGTGAAGGGACTGTGAATTTAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACCGCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
[+] EMBL BM602449 [CCGGCATCAGTAGCGCGCTTATCCTTTATCTCTCTGCGCAAACACACACACAGCCACACTTTGAGTGAAGGATAGGAGTGAAGGGACTGTGAATTTAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACCGCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5749#0 ------------------------------------------------------------
consensus_5749#1 ----------------------------------GGCGGGGGAATTCCTCGGGAACTGTT 26
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCA 60
consensus_5749#0 ----------AGGCAAAAAAGAAAACAAACAAACA--AACAAACAAACACAGCAGGGACA 48
consensus_5749#1 GGCCTGCTGGATGCTTTATGTAAAACAAACAAACA--AACAAACAAAAACAGCAGGGACA 84
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 TACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATT 120
consensus_5749#0 TGTGTTGTGGGGGGGCAGTGCGTGCA-GCAGCAGCGCGCTTATCCTT---TATCTCTCTG 104
consensus_5749#1 TGTGTTGTGGGGGGGCAGTGCGTGCA-GCAGCAGCGCGCTTATCCTT---TTTCTCTCTG 140
consensus_5749#3 --------------------CCGGCA-TCAGTAGCGCGCTTATCCTT---TATCTCTCTG 36
consensus_5749#2 TTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCG 180
* ** ** * ** ** * * * * *
consensus_5749#0 CGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAG-A 163
consensus_5749#1 CGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAG-A 199
consensus_5749#3 CGCAAAC-------------ACACACA------CAGCCACACTTTGAGTGAAGGATAGGA 77
consensus_5749#2 AGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAG-A 239
* * ** *** * * *** * ** *
consensus_5749#0 GTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCC 223
consensus_5749#1 GTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCC 259
consensus_5749#3 GTGAAGGGACTGTGAATT--TAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACC 135
consensus_5749#2 GAGATGCG-TTACAAAAGCTAGGAGATACAT-ATGTATGTTGTGAAACAATTAGTGGAAC 297
* ** * * ** * **** ***** **** * * *
consensus_5749#0 --ATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGT 281
consensus_5749#1 --ATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGT 317
consensus_5749#3 GCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGT 195
consensus_5749#2 CACTTTGTGATACATATATGAATTATATTTACAGATACATAT-TACTATTCGATGATTGT 356
** * * ** ** * * * *** *** ** * * * **
consensus_5749#0 GAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAA 341
consensus_5749#1 GAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAA 377
consensus_5749#3 GAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAA 255
consensus_5749#2 TGGGAAAAAAACACAGGTTAT-----ACAGGCGAAT------TGCAAAGACTGCACACAA 405
*** * * **** *** * ** ***** ****** ****
consensus_5749#0 GCATGAGGAGGGA-AGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGA 400
consensus_5749#1 GCATGAGGAGGGA-AGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGA 436
consensus_5749#3 GCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGA 315
consensus_5749#2 GCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGA 465
********* *** ************************* ****** ***** * *****
consensus_5749#0 GAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGG 460
consensus_5749#1 GAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGG 496
consensus_5749#3 GAGAGAGAGAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 374
consensus_5749#2 GAGAGAGAGAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 524
** * ** * ***** * * ** ** * ** * ** *** * *
consensus_5749#0 TTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGG 520
consensus_5749#1 TTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGG 556
consensus_5749#3 AGAGA------------------------------------------------------- 379
consensus_5749#2 AGAGAG-----AGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAA 579
**
consensus_5749#0 AG--ACAGCTCGGCAGCGAGATCCGG-TGGATGTGGTTTGTGTGTGTGTGCCACAGTTAA 577
consensus_5749#1 AG--ACAGCTCGGCAGCGAGATCCGG-TGGATGTGGTTTGTGTGT-TGTGCCACAGTTAA 612
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 AATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTAT 639
consensus_5749#0 ATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTAT-CCC 636
consensus_5749#1 ATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTAT-CCC 671
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 AGAG-AGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTC 698
consensus_5749#0 TGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTG 696
consensus_5749#1 TGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTG 731
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 GGTGGGTGGGTGTG---------------------------------------------- 712
consensus_5749#0 AAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATA 756
consensus_5749#1 AAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATC 791
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 ------------------------------------------------------------
consensus_5749#0 GGTCGCGACAAGACC-GTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAA 815
consensus_5749#1 GGTCGCGCCGCCCCCCGTTGTGCTCTCT-------------------------------- 819
consensus_5749#3 ------------------------------------------------------------
consensus_5749#2 ------------------------------------------------------------
consensus_5749#0 AAAAGGCCACATGTGCCCGAG 836
consensus_5749#1 ---------------------
consensus_5749#3 ---------------------
consensus_5749#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||