Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5750 cluster # 5750       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5750#0 length = 1130 sequences # 2  
consensus_5750#1 length = 746 sequences # 2  

consensusID : consensus_5750#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1130
fasta sequence
                              [CCGCGGACGCGTGGGCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGCCTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTACGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAAGTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCTGGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGAGATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACCACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGATGATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGATCGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAGTCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG]

[+] EMBL BM602908             [CCGCGGACGCGTGGGCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGCCTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTACGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX606847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAAGTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCTGGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGAGATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACCACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGATGATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGATCGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAGTCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG]


>consensus_5750#0 CCGCGGACGCGTGGGCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACC GCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCA TCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCA ACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCA GTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGC TGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCG AGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCA TGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACC TGTTCGTGTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACT TTGCGGCCTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCA CCGGGTACGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCT CGAGCATTGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGG CGTGCAAGTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGG TGCAGCTGGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCA CGATGGAGATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGT ACGAACCACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCG CCCGGATGATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCC ACGCGATCGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTT CAACGAGTCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG



consensusID : consensus_5750#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 746
fasta sequence
                              [CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGACGGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGCCTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTA]

[+] EMBL BM642949             [CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGACGGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGCCTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCG                                                                                                          ]
[+] EMBL BM639484             [                                                                                                                          ccgCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCACGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTCTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTA]


>consensus_5750#1 CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGAC GGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGC CTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTA CTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGA GGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTG CTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCT GTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTT CCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGA GCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGA CAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAA CGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCA GCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGT GTCGACCGTGCTGGGCGAAGACTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5750#0      ------------------------------------------------------------
consensus_5750#1      CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGAC 60
                                                                                  

consensus_5750#0      ------------------------------------------------------------
consensus_5750#1      GGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGC 120
                                                                                  

consensus_5750#0      ------------------------------------------------------------
consensus_5750#1      CTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTA 180
                                                                                  

consensus_5750#0      ------------------------------------------------CCGCGGACGCGT 12
consensus_5750#1      CTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGA 240
                                                                      **     * ** 

consensus_5750#0      GGGC-----GGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTG 67
consensus_5750#1      GGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTG 300
                      ****     ***************************************************

consensus_5750#0      CTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCT 127
consensus_5750#1      CTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCT 360
                      ************************************************************

consensus_5750#0      GTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTT 187
consensus_5750#1      GTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTT 420
                      ************************************************************

consensus_5750#0      CCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGA 247
consensus_5750#1      CCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGA 480
                      *************** ********************************************

consensus_5750#0      GCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGA 307
consensus_5750#1      GCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGA 540
                      ************************************************************

consensus_5750#0      CAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAA 367
consensus_5750#1      CAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAA 600
                      *************************************** ********************

consensus_5750#0      CGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCA 427
consensus_5750#1      CGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCA 660
                      ************************************************************

consensus_5750#0      GCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGT 487
consensus_5750#1      GCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGT 720
                      ************************************************************

consensus_5750#0      GTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGC 547
consensus_5750#1      GTCGACCGTGCTGGGCGAAGACTTTA---------------------------------- 746
                      **************************                                  

consensus_5750#0      CTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTA 607
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      CGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCAT 667
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      TGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAA 727
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      GTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCT 787
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      GGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGA 847
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      GATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACC 907
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      ACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGAT 967
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      GATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGAT 1027
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      CGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAG 1087
consensus_5750#1      ------------------------------------------------------------
                                                                                  

consensus_5750#0      TCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG 1130
consensus_5750#1      -------------------------------------------
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)