These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1130 fasta sequence [CCGCGGACGCGTGGGCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGCCTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTACGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAAGTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCTGGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGAGATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACCACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGATGATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGATCGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAGTCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG] [+] EMBL BM602908 [CCGCGGACGCGTGGGCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGCCTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTACGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATC ] [+] EMBL BX606847 [ TCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCATTGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAAGTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCTGGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGAGATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACCACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGATGATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGATCGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAGTCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG] consensusID : consensus_5750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 746 fasta sequence [CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGACGGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGCCTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTA] [+] EMBL BM642949 [CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGACGGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGCCTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTTCCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCG ] [+] EMBL BM639484 [ ccgCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTACTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGAGGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTGCTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCTGTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCACGAGTTCAACTTCTTCCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGAGCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTCTGCCCATCTTCCGCAAGCTGCTCGACAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAACGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCAGCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGTGTCGACCGTGCTGGGCGAAGACTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5750#0 ------------------------------------------------------------ consensus_5750#1 CCGCACGCTGGAAACGCTCAAGAAGGAGGCGGCCGACATCGGGCAGAAGGTGGAGGAGAC 60 consensus_5750#0 ------------------------------------------------------------ consensus_5750#1 GGATAAGGTGATCGGCGAGATCGAGACGGTGTCGCAGCAGTACCTGTCCCTGTCGCAGGC 120 consensus_5750#0 ------------------------------------------------------------ consensus_5750#1 CTGCTCGAACATCTACTTCACGATGGACAGCCTGAACCAGGTGCACTTCCTCTACCAGTA 180 consensus_5750#0 ------------------------------------------------CCGCGGACGCGT 12 consensus_5750#1 CTCGCTGAAGATGTTCCTCGACATCTTCAGCACGGTGCTGCACAACAACCCGAAGCTCGA 240 ** * ** consensus_5750#0 GGGC-----GGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTG 67 consensus_5750#1 GGGCAAATCGGACCACACGGCCCGGCTGCTCATCATCACGTCGGACCTGTACCGCGTGTG 300 **** *************************************************** consensus_5750#0 CTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCT 127 consensus_5750#1 CTACGATCGGGTGGCGCGCGGCATGCTGCACGCGGACCGGCTCACGTTCGCCATCCTGCT 360 ************************************************************ consensus_5750#0 GTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTT 187 consensus_5750#1 GTGCCGCATCCATCTGAAGGGCACGGCGGAACCGAACCTCGACCAGGAGTTCAACTTCTT 420 ************************************************************ consensus_5750#0 CCTGCGCAACAAGGAGGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGA 247 consensus_5750#1 CCTGCGCAACAAGGAAGGCTTGGTGGCGTCGGCCAGCCACGTCGATGGCGTCAGTGCCGA 480 *************** ******************************************** consensus_5750#0 GCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGA 307 consensus_5750#1 GCAGCTCGAGTCCGTCACCCGGCTGGCGACGCGTTTGCCCATCTTCCGCAAGCTGCTCGA 540 ************************************************************ consensus_5750#0 CAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAGCAGGGCTCGCCCGAGCAGAA 367 consensus_5750#1 CAAGATCAAATCCATGCCGGAGCTGACCGCCTGGCTGCAACAGGGCTCGCCCGAGCAGAA 600 *************************************** ******************** consensus_5750#0 CGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCA 427 consensus_5750#1 CGTTCCCGTGCTGTGGGATGAATCGAAGGCGCTGTCGGCGATTTCGGCCGCCATGCATCA 660 ************************************************************ consensus_5750#0 GCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGT 487 consensus_5750#1 GCTGCTGCTGATACAGGCGTTCCGGCCGGATCGTGTCATTGCCGCGGCGCACCTGTTCGT 720 ************************************************************ consensus_5750#0 GTCGACCGTGCTGGGCGAAGACTTTATGCCGCAGGCCGAGAAGGAGCTCGACTTTGCGGC 547 consensus_5750#1 GTCGACCGTGCTGGGCGAAGACTTTA---------------------------------- 746 ************************** consensus_5750#0 CTGCGTCGAGAAGGAGCTGACCAGCAACACGCCGGCCCTGCTCTGCTCGGTCACCGGGTA 607 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 CGATGCGTCGTCGCGCGTCGACGATCTCGCGGCGGAGCTGAACAAGCAGATCTCGAGCAT 667 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 TGCGATCGGTTCGGCGGAAGGCTTCAACCAGGCGGAACGGGCCATCAACATGGCGTGCAA 727 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 GTCGGGCCGCTGGGTGCTGCTGAAGAACGTGCACCTGGCCCCCCAGTGGCTGGTGCAGCT 787 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 GGAGAAGAAGCTTCACTCGCTGCAGCCCCACTCCGGCTTCCGGCTGTACCTCACGATGGA 847 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 GATCAACCCGAAGGTGCCGGTGAATCTGCTGCGTGCCGGTCGCATCTTCGTGTACGAACC 907 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 ACCGCCAGGCATTCGGGCTAATCTGCTGCGCACGTTCTCGACCGTGCCGGCCGCCCGGAT 967 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 GATGAAGCAGCCGAGCGAGCGCGCCCGGCTGTACTTCCTGCTGTCCTGGTTCCACGCGAT 1027 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 CGTGCAGGAGCGGCTCCGGTACGTGCCGCTCGGATGGGCGAAGAATACGAGTTCAACGAG 1087 consensus_5750#1 ------------------------------------------------------------ consensus_5750#0 TCGGATCTGCGCGTCGCCTGCGACACGCTCGACACGTGGATCG 1130 consensus_5750#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||