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Anopheles gambiae
cluster # 5755 cluster # 5755       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5755#0 length = 923 sequences # 3  
consensus_5755#1 length = 451 sequences # 1  

consensusID : consensus_5755#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 923
fasta sequence
                              [GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC-CACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGCCCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAAGC]

[+] EMBL CNS08WH4             [GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC CACAGGGACGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGCTCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAA  ]
[+] EMBL CNS090I2             [                             GTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC CACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTG AACGTCCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTTGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAAGC]
[-] EMBL CNS090I3             [                                                                         AGTCTCGCTCTGCATACGCGTTGTGTTTCCACACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCG TCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGACACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGACCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAA CTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACAT                                                                                                                                                  ]


>consensus_5755#0 GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAG GGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCCCACAGGGATGATCGTGG ATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATC TATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTT CACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGC CTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGT AAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATT GAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGA GAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAA ACAATGATCGCCGTGGAAAAGTGAAACGCCCGAGGTGATCAATGGCGTTGACATTCCACC GGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCC GCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGT GCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTC GAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGC CCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAACACCG AAGTAATGCGACGCGGAATAAGC



consensusID : consensus_5755#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence
                              [ACGGCACGAGGTCTATTNTATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNNGCCTACATGATTGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAGAGAGAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTCCACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA]

[+] EMBL BX619689             [ACGGCACGAGGTCTATTNTATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNNGCCTACATGATTGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAGAGAGAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTCCACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA]


>consensus_5755#1 ACGGCACGAGGTCTATTNTATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCC GNGNAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTG CGCTCNNGCCTACATGATTGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTA ATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTG TTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAGAGAGAGAGA GAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAA TGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTCCACCGG ACAGCTGAGAAGTAGAGCCCACGGTGAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5755#0      GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAG 60
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      GGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCCCACAGGGATGATCGTGG 120
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      ATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAA-GGCAT 179
consensus_5755#1      ------------------------------------------------ACGGCACGAGGT 12
                                                                      **** * *   *

consensus_5755#0      CTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGA-AAGG 238
consensus_5755#1      CTATTN-----TATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGG 67
                      ****       * *****************************************   ***

consensus_5755#0      TTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGC 298
consensus_5755#1      TTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNN 127
                      **********************************************************  

consensus_5755#0      GCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAG 358
consensus_5755#1      GCCTACATGATTGCAGCAGCAGCAGCAGC---AACAGCAGACTACCTGCCCTTCTAATAG 184
                      ********** ******************   ****************************

consensus_5755#0      GTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAA 418
consensus_5755#1      GTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAA 244
                      ************************************************************

consensus_5755#0      TTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGA 478
consensus_5755#1      TTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAG----------AGA 294
                      ********************************************* *           **

consensus_5755#0      GAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTT 538
consensus_5755#1      GAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTT 354
                      ********************* **************************************

consensus_5755#0      AAACAATGATCGCCGTGGAAAAGTGAAACGCCCGAGGTGATCAATGGCGTTGACATTC-- 596
consensus_5755#1      AAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTC 414
                      ******************************  *************************   

consensus_5755#0      CACCGGACAGCTGAGAAGTAGAGCC-ACGGTGAGAGAGACCAACGGTACGTCATGGTCAA 655
consensus_5755#1      CACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA----------------------- 451
                      ************************* ***********                       

consensus_5755#0      GCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACG 715
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      AGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTAC 775
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      ATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTAT 835
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      CACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAA 895
consensus_5755#1      ------------------------------------------------------------
                                                                                  

consensus_5755#0      CACCGAAGTAATGCGACGCGGAATAAGC 923
consensus_5755#1      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)