These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGG-ACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGA-CAGCCTACGAGGCGGGCCGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCC-AGACCGGCGGCGTGGTGTACGCGGACAAGTCGCCCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC] [+] EMBL BM654001 [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCGCATCGCAAGG ACCTCTGAAAACAAAC ACACA CACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTGCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATATTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGA CAGCCTACGAGGCGGGCCGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCC AGACCGGC ] [+] EMBL BX627285 [ GCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGG ACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGACCAG CTACNAGGCGGG CGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCCAAGACCGCCGGCGTGGTGTACGCGGACAAGTCGCCCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC] [+] EMBL BX627425 [ TATCCTCGAGCAGCGTTCCACATCGCAAGGNACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCANCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCATCCTACAGCTCGTACGAAGCGTCCCCCGCC ] consensusID : consensus_5761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAATAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCAGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG] [+] EMBL BM643100 [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAATAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCAGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5761#0 CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT 60 consensus_5761#1 CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT 60 ************************************************************ consensus_5761#0 CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACAC------ACCAC------ 108 consensus_5761#1 CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAA 120 ******************************************* ** ** consensus_5761#0 ------------------------------------------------------------ consensus_5761#1 TAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCA 180 consensus_5761#0 GTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCC 168 consensus_5761#1 GTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCC 240 ************************************************************ consensus_5761#0 GTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATT 228 consensus_5761#1 GTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATT 300 *********** *************************************** ******** consensus_5761#0 TAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGT 288 consensus_5761#1 TAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGT 360 ***** ****************************************************** consensus_5761#0 TGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCG 348 consensus_5761#1 TGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCG 420 ************************************************************ consensus_5761#0 GGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGA 408 consensus_5761#1 GGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGA 480 ************************************************************ consensus_5761#0 TCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGT 468 consensus_5761#1 TCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGT 540 ************************************************************ consensus_5761#0 ACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACG 528 consensus_5761#1 ACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG---- 596 ******************************************************** consensus_5761#0 GTGCGTCCGGCGAGGACCTGAAGCTGACAGCCTACGAGGCGGGCCGTGAAGACGGTCGAG 588 consensus_5761#1 ------------------------------------------------------------ consensus_5761#0 GCTGCCCCGGCCGTCACCTACACCGCCAGACCGGCGGCGTGGTGTACGCGGACAAGTCGC 648 consensus_5761#1 ------------------------------------------------------------ consensus_5761#0 CCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC 704 consensus_5761#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||