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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1222 fasta sequence
[GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTACATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTGCCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGCAAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAAGTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTCACAGCCATGGAAGAGCAACCTTAAAATCTGCCGTTTGCGTTACGCTAGTTGTAAGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACGCATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAACTTTGAGCGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL CNS09QBQ [GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTACATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTGCCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGCAAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAAGTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTC ]
[-] EMBL CNS09QBP [ TGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCG GAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCG TTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTCACAGCCATGGAAGAGCAACCTTAAAATCTGCCGTTTGCGTTACGCTAGTTGTAAGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACGCATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAA ]
[-] EMBL BM615524 [ CTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGTGGAATAACAA GTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCAACCTCAGTCAAGTACAGCTCTTCAAGTCACCATTTAACTTTGAGCGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_5766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AAATACTCGTCCTCAATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCAACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATGGAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCGGACGCGTGGG]
[-] EMBL BM603925 [AAATACTCGTCCTCAATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCAACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATGGAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCGGACGCGTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5766#0 GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTAC 60
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 ATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTG 120
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 CCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGC 180
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 AAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAA 240
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 GTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACA 300
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 GGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCA 360
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 GTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGG 420
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 TAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCC 480
consensus_5766#1 ------------------------------------------------------------
consensus_5766#0 ACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCA 540
consensus_5766#1 ---------------------------------------------AAATACTCGTCCTCA 15
***************
consensus_5766#0 ATAAA-CGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGAT 599
consensus_5766#1 ATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGAT 75
***** ******************************************************
consensus_5766#0 GTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCA 659
consensus_5766#1 GTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCA 135
****************************************************** *****
consensus_5766#0 AGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGA 719
consensus_5766#1 ACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGA 195
* ************* *********** ********************************
consensus_5766#0 TACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATC 779
consensus_5766#1 TACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATC 255
********************************************* **************
consensus_5766#0 GACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGA 839
consensus_5766#1 GACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGA 315
************************************************************
consensus_5766#0 TGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGG 899
consensus_5766#1 TGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGG 375
********************** ************************************
consensus_5766#0 GCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTC 959
consensus_5766#1 GCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCC 435
*********************** *********** ******************** * *
consensus_5766#0 ACAGCC---------------------------------------------------ATG 968
consensus_5766#1 ACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATG 495
****** ***
consensus_5766#0 GAA--------------GAGCAACC--TTAAAATCTGCCGTTTGCGTTACGCTAGTTGTA 1012
consensus_5766#1 GAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTA 555
*** ** *** ***************** ***************
consensus_5766#0 AGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACG 1072
consensus_5766#1 AGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACG 615
** ******************************************** ************
consensus_5766#0 CATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATT 1132
consensus_5766#1 CATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATT 675
********** *************************************************
consensus_5766#0 GCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAACTTT 1192
consensus_5766#1 GCCACAAAGGAATTGAGCGGACGCGTGGG------------------------------- 704
** ****** ******** * * *
consensus_5766#0 GAGCGGACGCGTGGGCGGACGCGTGGGCGG 1222
consensus_5766#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||