cluster # 5777

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5777 cluster # 5777 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5777#0 length = 735 sequences # 3

consensus_5777#1 length = 606 sequences # 1

consensusID : consensus_5777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 735
fasta sequence

                              [CAGAATTCGGNCACGAGGTNACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGCCTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC-GCGGAGAAAGCGACGTGCGCCG---GGCGGCGGCGGGAAAG-AAATCCACACAAAAGACGA---CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC-TTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAA-C-ACCGCCGCCCCACCGACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC-GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCA-CTGAGCCGCACA-CGTGGGACCCGTACCCGTGGGT-AGCGG-GTGGTGGACGGTNCGGGGCGATCTTGCCGGGTCGCANCGGTACTGGTGCG]

[+] EMBL BX468791             [CAGAATTCGGNCACGAGGTNACGCCGGACCGAGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACAGTTGTGCCTGTAACGGGAGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGACAGTTCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTATACTCTCTGCTGCCCTTGCCCCTTTCTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTACTTCCCGGCGGAGAAAGCGACGTGCGCCG   AGCGGCGGCGGGAAAGAAAATCCACACGAAAGACGAAAGCCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTCATCATCATACATGTCCACCCGTTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAA C ACCG CG CCCACCGACTGCCCGCCATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCA CTGAGCCGCACA CGTGGGACCCGTACCCGTGGGT AGCGG GTGGTGGACGGTNCGGGGCGATCTTGCCGGGTCGCANCGGTACTGGTGCG]
[+] EMBL BM639926             [            ccggaaacACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCG  CGTAACGGTTGTGCCTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTGCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC GCGGAGAAAGCGACGTGCGCCGGGCGGCGGCGGCGGGAAAG AAATCCACACAAAAGACGA   CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCTCCTGCCCTGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC TTTCCCAGCGAGCGAGCGACACCGCGAAGATGGCAGAC   GATGAGGGCGGTGGACTTGCGTTGGCAACGGCACGCACCACGAAACC ACCGCCGCCCCACCGACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGAGTTGCA C                                                                                           ]
[+] EMBL BM627798             [                           ccgGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCGTGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGCCTGTAACGGGGGGCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTACAATTTCTTCCAATCACAGGCCGCTGCCTCTACTATCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC GCGGAGAAAGCGACGTGCGCCG   GGCGGCGGCGGGAAAG AAATCCACACAAAAGACGA   CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCAGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC TTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACAAAG CTACCGCCGCCCCACCCACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCACCTGAGCCGCACACCTTGGGACCCGTACCCGTGGGTGAGCGGTGTGGTGGACGGTtcc                                   ]




>consensus_5777#0
CAGAATTCGGNCACGAGGTNACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCA
GGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGC
CTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTGCAATT
TCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCT
GCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCCGCGGA
GAAAGCGACGTGCGCCGGGCGGCGGCGGGAAAGAAATCCACACAAAAGACGACCGCTAAT
TGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTCG
TCATCATACATGTCCACCCTTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCA
GATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAACACCGCCGCCCCACC
GACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCCGGGGGCGGACGAGAGCAGCTGC
GCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCACTGAGCCGCACACG
TGGGACCCGTACCCGTGGGTAGCGGGTGGTGGACGGTNCGGGGCGATCTTGCCGGGTCGC
ANCGGTACTGGTGCG

consensusID : consensus_5777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CCGATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGCGGACCAGAGCAGCTGCGCCACTGCTTCCTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCACCTGAGCCGCACACCGTGGGACCCGTACCCGTGGGTGAGCGGCGTGGTGGACGGTTCCGGGGCGGATCTGGCCGGCGTCCGCACCGGTGACTGTGTGCTGGAATCGAACGGCGAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCGCAGCCGGCGCAGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTGTTGCTGTGGAACTCGGGCTTTGAGAAGAATAACCTAAATCCACAGTCGCTGTCCCGGTTCGCCAACTGTTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGATTATACCACCGTCCTGACAGTGCAACCATGGCCATCTGATCTGCTCCGGCTGTCGGTCGCGCACGACCAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCTGTTTCACTATTTGGTGCAAACGCTCGGACATGAAGCTGACCATCAGACAGCGTTGGACCCT]

[+] EMBL BM605119             [CCGATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGCGGACCAGAGCAGCTGCGCCACTGCTTCCTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCACCTGAGCCGCACACCGTGGGACCCGTACCCGTGGGTGAGCGGCGTGGTGGACGGTTCCGGGGCGGATCTGGCCGGCGTCCGCACCGGTGACTGTGTGCTGGAATCGAACGGCGAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCGCAGCCGGCGCAGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTGTTGCTGTGGAACTCGGGCTTTGAGAAGAATAACCTAAATCCACAGTCGCTGTCCCGGTTCGCCAACTGTTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGATTATACCACCGTCCTGACAGTGCAACCATGGCCATCTGATCTGCTCCGGCTGTCGGTCGCGCACGACCAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCTGTTTCACTATTTGGTGCAAACGCTCGGACATGAAGCTGACCATCAGACAGCGTTGGACCCT]




>consensus_5777#1
CCGATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGCGGACCAGAGCAGCTGCGCCACTGC
TTCCTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCACCTGAGCCGCACACCGTGGGAC
CCGTACCCGTGGGTGAGCGGCGTGGTGGACGGTTCCGGGGCGGATCTGGCCGGCGTCCGC
ACCGGTGACTGTGTGCTGGAATCGAACGGCGAGGATCTGCTCGGCCTGAAGGTGATCGAC
ATTGCCAGGCGGGTGCGCAGCCGGCGCAGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTG
TTGCTGTGGAACTCGGGCTTTGAGAAGAATAACCTAAATCCACAGTCGCTGTCCCGGTTC
GCCAACTGTTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGATT
ATACCACCGTCCTGACAGTGCAACCATGGCCATCTGATCTGCTCCGGCTGTCGGTCGCGC
ACGACCAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGAC
AAGCTGTTTCACTATTTGGTGCAAACGCTCGGACATGAAGCTGACCATCAGACAGCGTTG
GACCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5777#0      CAGAATTCGGNCACGAGGTNACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCA 60
consensus_5777#1      CCGATTCCCGA--AGGGCCGAAAGCAGGCTCCGGGG------GCGGACCAGAG--CAGCT 50
                      * ** * * *    * *   *   * * *  ****       *  ** *** *  * ** 

consensus_5777#0      GGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGC 120
consensus_5777#1      G-CGCCAC-TGCTTCCTGCCGG--CGGACGAGAACGGGTGC-CTTGGGCTGCACCTGAGC 105
                      * *  * * ** *   *  * *  ** * * ** ** * ** *    *   *   ** **

consensus_5777#0      CTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTGCAATT 180
consensus_5777#1      CGCACACCGTGGGACCCGTACCCGTGGG-TGAGCGGCGTGGTGGACGGTTCCGGGGCGGA 164
                      *    ** * **  * ***   * *    ** *  * *** * **  **** * *     

consensus_5777#0      TCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCT 240
consensus_5777#1      TCT----------GGCCGGCGTCCGCA----CCGGTGACTGTGTGCTGGAATCGAACGGC 210
                      ***          *****  * *   *    * * ** *  **  *   * ***   *  

consensus_5777#0      GCAT-TGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCCGCGG 299
consensus_5777#1      GAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCG---CAGCCGGCGC 267
                      *    * **  * ** *   *   * * **  * *   * * * ***   *  ** *** 

consensus_5777#0      AGAAAGCGACGTGCGCCGGGCGGCGGCGGGAAAGAAATCCACACAAAAGACGACCGCTAA 359
consensus_5777#1      AGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTG----TTGCTGTGGAACTCGGGCTTTGA 323
                      **    **    ** **** *****  **        *        **  **  *  * *

consensus_5777#0      TTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTC 419
consensus_5777#1      GAAGAATAACCTA-AATCCACAGTCG--------------CTGTCCCGGTTCGCCAACTG 368
                         *   *** ** *   *   ****              ******* *  * **  ** 

consensus_5777#0      GTCATCATACATGTCCACCCTTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCC 479
consensus_5777#1      TTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGAT--TATACCA 426
                       *       ***  **  ***     ** *  *** *      *  * ***   * *** 

consensus_5777#0      AGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAACACCGCCGCCCCAC 539
consensus_5777#1      CCGTCCTGACAGTGCAACCATGGCCATC-TGATCTGCTCCGGCTGTCGGTCGCGCACGAC 485
                         *   * * *** *     *        *    ** **      *     *** * **

consensus_5777#0      CGACTGCCCGCCAT-TCCCGAAGTGCCGAAAGCAGGCTCCGGGGGCGGACGAGAGCAGCT 598
consensus_5777#1      CAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCT 545
                      * * ** ***   * **  ** ****        ***    *   **     **  ****

consensus_5777#0      GCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCACTGAGCCGCACA 658
consensus_5777#1      GTTTCACTATTTGGTGCAAACGCTCGGACATGAA-GCTGACCATCAGACAGCGTTGGACC 604
                      *   ****  ** ****   **  **   * *   **      *   ** * *  * ** 

consensus_5777#0      CGTGGGACCCGTACCCGTGGGTAGCGGGTGGTGGACGGTNCGGGGCGATCTTGCCGGGTC 718
consensus_5777#1      CT---------------------------------------------------------- 606
                      *                                                           

consensus_5777#0      GCANCGGTACTGGTGCG 735
consensus_5777#1      -----------------