These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 554 fasta sequence [GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAGGACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTACGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTGTGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGT] [-] EMBL CNS08U1D [GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAGGACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTACGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGAT ] [+] EMBL BM606142 [ ccgAAACAATTTGCCGGCGGCGCGGAAAGCACGCACTCTTGTTTGCACAAAAGCAGCAAAGAAAAGCTATCCCGAAGGTAAAATTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTAATAATGGCACAAACAACCGT CGCGAATCAATCAACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTGTGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGT] consensusID : consensus_5781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CCGGCGGCGCGGAAAGCACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG] [+] EMBL CNS08U1C [CCGGCGGCGCGGAAAGCACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG] consensusID : consensus_5781#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CCGAACAATTTGCCGGCGGCGCGGAAAGCACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGTGAAACGT] [+] EMBL BM610780 [CCGAACAATTTGCCGGCGGCGCGGAAAGCACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGTGAAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5781#0 GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAG 60 consensus_5781#2 --------------------------------CCGAACAATTTGCCGGCGGCGCGGAAAG 28 consensus_5781#1 --------------------------------------------CCGGCGGCGCGGAAAG 16 ************ *** consensus_5781#0 GACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGA 120 consensus_5781#2 CACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGA 88 consensus_5781#1 CACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAG-TAAAGTTGTGA 75 *** * *********************** **************** ******* *** consensus_5781#0 GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTA 180 consensus_5781#2 GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGT- 147 consensus_5781#1 GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGT- 134 **************************************** ****************** consensus_5781#0 CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGAT 240 consensus_5781#2 CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGAT 207 consensus_5781#1 CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGAT 194 ************************************************ *********** consensus_5781#0 ACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTT 300 consensus_5781#2 ACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTT 267 consensus_5781#1 ACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTT 254 ****************** *********** ***************** *********** consensus_5781#0 CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 360 consensus_5781#2 CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 327 consensus_5781#1 CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 314 ************************************************************ consensus_5781#0 AACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 420 consensus_5781#2 AACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 387 consensus_5781#1 AACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 374 ****** ***************************************************** consensus_5781#0 CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTG 480 consensus_5781#2 CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTG--- 444 consensus_5781#1 CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTG--- 431 ************************************* ******************* consensus_5781#0 TGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAG 540 consensus_5781#2 ---------TGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAG 495 consensus_5781#1 ---------TGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAA 482 ********************* ******************** ** ** consensus_5781#0 AAGAGATAACTCGT--------------------- 554 consensus_5781#2 AAGAGATAACTCGTGAAACGT-------------- 516 consensus_5781#1 AAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG 517 ** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||