These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence [CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCGAATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGGAGGAACGGTTGGTAAATCAGCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAGCCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTGCTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTGAAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATATTGTGTAATGCCCATTACGTTACAGAACAAAAATCTGGAAACGCGTCAGAAAGACGTAACAGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATGTTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAAAGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAGTATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAATCTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGATTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAGATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTGGAACATAGATACAAC] [+] EMBL BM640087 [CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCGAATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGGAGGAACGGTTGGTAAATCAGCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAGCCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTGCTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTGAAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATATTGTGTAATGCCCATTACGTTACAGAACAAAAATCTGGAAACGCGTCAGAAAGACGTAACAGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGG ] [+] EMBL BX622315 [ AACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATGTTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAAAGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAGTATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAATCTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGATTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAGATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTGGAACATAGATACAAC] [+] EMBL BX620172 [ AACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGNTATATACGGCCACCGACACCTGATAGCCAACTGCNAAGAGCTCACGTGCTACGGTTTAGGCATAATTCTGAGATGTTACGCNAACATTATCCCGAGTTGTATAGA ] consensusID : consensus_5793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAGTTAATGAGGCGTTTGCTGACTTAGTTGAAGATGTTACAGAAGTAGTTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTGAAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATATTACTGCCCCCTATCAAAAGCCAGCAACAGAAAGGAAATAATTCAAACACTAGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAAGTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATGTTACGCGAACA] [+] EMBL BM608212 [CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAGTTAATGAGGCGTTTGCTGACTTAGTTGAAGATGTTACAGAAGTAGTTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTGAAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATATTACTGCCCCCTATCAAAAGCCAGCAACAGAAAGGAAATAATTCAAACACTAGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAAGTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATGTTACGCGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5793#0 CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCG 60 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 AATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGG 120 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 AGGAACGGTTGGTAAATCA-GCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAG 179 consensus_5793#1 --------CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAG 52 ** * * * * * ** *** * * * * ***** ** ** consensus_5793#0 CCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTG 239 consensus_5793#1 TTAATGAGGCGTTTGCTGACTTAGTTGAAGA---------------TGTTACAGAAGTAG 97 ** * ** **** **** ** * * * * * * consensus_5793#0 CTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTG 299 consensus_5793#1 TTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTG 157 *** **** * * *** * *** ***** * * * * * ******* consensus_5793#0 AAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATAT 359 consensus_5793#1 AAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATAT 217 ********* ** * *** ** ** * * * * * * **** consensus_5793#0 TGTGTAATGCCCATTACGTTACAG-AACAAAAATCTGGAAACGCGTCAGAAAGACGTAAC 418 consensus_5793#1 TAC-TGCCCCCTATCAAAAGCCAGCAACAGAAA---GGAAATAATTCAAA------CACT 267 * * ** ** * *** **** *** ***** *** * * consensus_5793#0 AGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAA 478 consensus_5793#1 AGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAA 327 ** *** ****** ******** **** ******* ** ***** ********* consensus_5793#0 AATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGC 538 consensus_5793#1 AATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGC 387 ************************************************************ consensus_5793#0 GATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGAT 598 consensus_5793#1 GATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGAT 447 *** *** ******** ***************** ************************ consensus_5793#0 GAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCG 658 consensus_5793#1 GAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCG 507 ************************************************************ consensus_5793#0 GTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAC 718 consensus_5793#1 GTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAA 567 *********************************************************** consensus_5793#0 GTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCG 778 consensus_5793#1 GTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCG 627 **** *** *************************************************** consensus_5793#0 ACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATG 838 consensus_5793#1 ACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATG 687 ** ********************************** ********************* consensus_5793#0 TTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAA 898 consensus_5793#1 TTACGCGAACA------------------------------------------------- 698 *********** consensus_5793#0 AGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAG 958 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 TATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAAT 1018 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 CTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGA 1078 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 TTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAG 1138 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 ATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTG 1198 consensus_5793#1 ------------------------------------------------------------ consensus_5793#0 GAACATAGATACAAC 1213 consensus_5793#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||