These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1104 fasta sequence [CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGGAAATTTCTACACTTTGCGTAATGTTTCGTGGTA-ATCGC-TTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTTTTTCACGACAATAATATAGAACTAAGGATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTGCAG] [+] EMBL BM656248 [CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGGAAATTTCTACACTTTGCGTAATGTTTCGTGGTACATCGCATTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACATCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACCAATATTATACATTACCG ] [+] EMBL CNS08RVF [ TTCGTGGTA ATCGC TTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGTACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTT ] [-] EMBL CNS08RVG [ CGGTTGGACTACCCGCTGCGGCACTTTTTCCCCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGAACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCCCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTTTTTCACGACAATAATATAGAACTAAGGATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTGCAG] consensusID : consensus_5798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence [GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGCTGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAAACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATACGTGTCTTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTGAAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGAAAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACCATTATTATTGAACTTAGGGGATCCTAACTGAAGTA] [+] EMBL BX467821 [GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGCTGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAAACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATACGTGTCTTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTGAAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGAAAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACCATTATTATTGAACTTAGGGGATCCTAACTGAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5798#0 CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGG 60 consensus_5798#1 ------------------------------------------------------------ consensus_5798#0 AAATTTCTACACTTTGCGTAATGTTTCGTGGTAATCGCTTGGGAGGTGTATTAATCGGTG 120 consensus_5798#1 ------------------------------------------------------------ consensus_5798#0 CCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTG 180 consensus_5798#1 ------------------------------------------------------------ consensus_5798#0 TCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGC 240 consensus_5798#1 ------------------------------------------------------------ consensus_5798#0 ACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGG 300 consensus_5798#1 -----------------------GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGG 37 * ** ** * * **************** consensus_5798#0 ATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTC 360 consensus_5798#1 ATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTC 97 ********** ************************************************* consensus_5798#0 TACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCT 420 consensus_5798#1 TACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCT 157 ************************************************* ********** consensus_5798#0 GCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAG 480 consensus_5798#1 GCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAG 217 **** ******************************************************* consensus_5798#0 CGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCT 540 consensus_5798#1 CGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCT 277 ******************************** ********** **************** consensus_5798#0 GGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGC 600 consensus_5798#1 GGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGC 337 ******************************************************* **** consensus_5798#0 TGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGC 660 consensus_5798#1 TGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGC 397 **** ******************************************************* consensus_5798#0 ATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAG 720 consensus_5798#1 ATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAG 457 ************************************************************ consensus_5798#0 CGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTA 780 consensus_5798#1 CGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTA 517 ********** *********************** ************************* consensus_5798#0 TGCAATTAAATTGTT-TGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAG--TTAAAA 837 consensus_5798#1 TGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAA 577 *************** *********** ******************* ****** consensus_5798#0 AACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTC 897 consensus_5798#1 ACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATA-CGTGTC 636 * *************************************************** ****** consensus_5798#0 TTATTTATGCTATACTTTGTACGTCG----TGTAGAGTGTATCATT-GATTGG-CAATGA 951 consensus_5798#1 TTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTG 696 ************************* * ********** ****** *** consensus_5798#0 AAA---CAGAATGCAAAA--TG---ACAATC---GGCAT---GGAATGT-GATACACG-- 994 consensus_5798#1 AAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGA 756 *** ************ ** ***** ***** * *** ******** consensus_5798#0 AAACCG--TCTTTATGG-CCATTCCAAAAAA--TGAATGTAATTTTTTCACGA------C 1043 consensus_5798#1 AAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACC 816 ****** ******* ***** * * *** ** * * **** * * consensus_5798#0 AATAATATAGAACTAAGG--ATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTG 1101 consensus_5798#1 ATTATTATTGAACTTAGGGGATCCTAACTGAAGTA------------------------- 851 * ** *** ***** *** ** ************ consensus_5798#0 CAG 1104 consensus_5798#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||