These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 955 fasta sequence [CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATTAATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA------CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGATTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAGTCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATAGGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGTGTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTGTGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGGGGA] [+] EMBL BM654232 [CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATTAATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTC ] [+] EMBL BM609205 [ ccgcgAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCTGTTGCTGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAACGAGTTGTAAAATAGGACAGGAAGTAGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTG TTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCATCAGTTTGAATCCGGTGTGCACACAGCAGCAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACAC ACTGTCCCTGTTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGATTTTACACAGCGTTCA ] [+] EMBL BX625768 [ GTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGTTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCTCGCGATTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAGTCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATAGGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGTGTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTGTGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGGGGA] consensusID : consensus_5800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTGCGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATATTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCCCCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT] [+] EMBL BX628047 [CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTGCGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATATTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCCCCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5800#0 ------------------------------------------------------------ consensus_5800#1 CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTG 60 consensus_5800#0 ------------------------------------------------------------ consensus_5800#1 CGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATA 120 consensus_5800#0 ------------------------------------------------------------ consensus_5800#1 TTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCC 180 consensus_5800#0 --------CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCAT 52 consensus_5800#1 CCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCAT 240 *** * **************************************** consensus_5800#0 CACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGC 112 consensus_5800#1 CACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGC 300 *************************************** ***** **** ********* consensus_5800#0 TAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACC 172 consensus_5800#1 TAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGA-----AAGCTCATACACCCACC 355 ************************************** ***************** consensus_5800#0 ACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATT 232 consensus_5800#1 ACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATT 415 ********************************************** ************* consensus_5800#0 AATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTC 292 consensus_5800#1 GATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTC 475 ********************* ************************************* consensus_5800#0 CCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTG 352 consensus_5800#1 CTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTG 535 * ********************* ************************** ********* consensus_5800#0 GCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAG 412 consensus_5800#1 GCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT--------- 586 *************************************************** consensus_5800#0 GTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCT 472 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 CGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACACAGCAGCAGCA 532 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 GCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACAC 592 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 ACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGA 652 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAG 712 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATA 772 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 GGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGT 832 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 GTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTG 892 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGG 952 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 GGA 955 consensus_5800#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||