These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 994 fasta sequence [CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAGCGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC-AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCGCTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCCCGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATCCTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGACAAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG] [+] EMBL BM633839 [CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAGCGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGGGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAACAAAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTTTGTGTGTGTGTGt ] [+] EMBL BM610255 [ ccgCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGT ] [+] EMBL BX621759 [ GCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCGCTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCCCGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATCCTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGACAAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG] consensusID : consensus_5805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT] [+] EMBL BM614523 [CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5805#0 CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGA 60 consensus_5805#1 ----CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGA 56 ******************************* *** ***************** consensus_5805#0 AAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTG 120 consensus_5805#1 AAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGC----------GTTTTCTGTGTG 106 ************************************** ************ consensus_5805#0 TTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAG 180 consensus_5805#1 TTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAG 166 *********************************************** ************ consensus_5805#0 CGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAG 240 consensus_5805#1 CGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAG 226 *** *** ********* *** ************************************** consensus_5805#0 AGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTG 300 consensus_5805#1 AGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTG 286 ************************************** ********************* consensus_5805#0 TGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCT 360 consensus_5805#1 TGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCT 346 ************************************************************ consensus_5805#0 TTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTT 420 consensus_5805#1 TTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT---------------------- 384 ***************************** ******** consensus_5805#0 ACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAA 480 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACG 540 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCA 600 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 ACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAACAAAAAAACTTGCCTCTGTGTGT 660 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTG 720 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCG 780 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCC 840 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATC 900 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGAC 960 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 AAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG 994 consensus_5805#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||