cluster # 5805

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Anopheles gambiae
cluster # 5805 cluster # 5805 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5805#0 length = 994 sequences # 3

consensus_5805#1 length = 384 sequences # 1

consensusID : consensus_5805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 994
fasta sequence

                              [CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAGCGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC-AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCGCTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCCCGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATCCTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGACAAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG]

[+] EMBL BM633839             [CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAGCGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGGGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAACAAAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTTTGTGTGTGTGTGt                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM610255             [    ccgCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGT                                                                                                                                                                                                                                                                           ]
[+] EMBL BX621759             [                                                                                                                                                                                                                                                                                                             GCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTTACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAACTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACGCGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCAACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAAC AAAAAAACTTGCCTCTGTGTGTGGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTGCGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCGCTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCCCGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATCCTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGACAAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG]




>consensus_5805#0
CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGA
AAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTG
TTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAG
CGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAG
AGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTG
TGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCT
TTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTT
ACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAA
CTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACG
CGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCA
ACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAACAAAAAAACTTGCCTCTGTGTGT
GGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTG
CGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCG
CTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCC
CGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATC
CTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGAC
AAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG

consensusID : consensus_5805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT]

[+] EMBL BM614523             [CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCTGTGTGTTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT]




>consensus_5805#1
CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGAAAGC
CATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCTGTGTGTTTTCTCTGTGTGT
TGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAGCGACAAATACGATC
GACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAGAGCACACCCTCGGG
GAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTGTGCGTGTGTGAGTG
TGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCTTTAGACAGCTATAT
GTAGCCTGGTGTCTAAGTGTGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5805#0      CCGAGAACTTGCTAGCGATCAGATTCGTGTGCGTGTGTGCGAACGAAGAAATCATTGTGA 60
consensus_5805#1      ----CCGCTTGCTAGCGATCAGATTCGTGTGCGTGTGTACGACCGAAGAAATCATTGTGA 56
                             ******************************* *** *****************

consensus_5805#0      AAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGCGTTTTCCATTGTTTTCTGTGTG 120
consensus_5805#1      AAGCCATCTCGCTACATCCAGTGTGTTTCGGAACGAGC----------GTTTTCTGTGTG 106
                      **************************************          ************

consensus_5805#0      TTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAAGAGTGGTCACCAG 180
consensus_5805#1      TTTTCTCTGTGTGTTGAGCGAGAATAGAAGAAGCAGCTGAATAACAACAGTGGTCACCAG 166
                      *********************************************** ************

consensus_5805#0      CGATAAACACGATCGACCTCACATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAG 240
consensus_5805#1      CGACAAATACGATCGACATCATATTTCGATCGTAAACATCCAGCAACAAGGCGCCGCGAG 226
                      *** *** ********* *** **************************************

consensus_5805#0      AGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATTGTTCTGCCTCAACCCGGTGTG 300
consensus_5805#1      AGCACACCCTCGGGGAAACTACCTTGTTCCCCCGCCATAGTTCTGCCTCAACCCGGTGTG 286
                      ************************************** *********************

consensus_5805#0      TGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCT 360
consensus_5805#1      TGCGTGTGTGAGTGTGACCCAGTAAAAGCAGCGAAAATGATGGAAAAATACAAGTCCTCT 346
                      ************************************************************

consensus_5805#0      TTAGACAGCTATATGTAGCCTGGTGTCTAGGTGTGCGTGCGTGCGTGTGTGTGTGTGGTT 420
consensus_5805#1      TTAGACAGCTATATGTAGCCTGGTGTCTAAGTGTGCGT---------------------- 384
                      ***************************** ********                      

consensus_5805#0      ACAATTTTCCAAATCTTTCTGAGCGAGCTGAAAAAGGTACAAGAAAGCGAACAAAACAAA 480
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTTGATGCACTACCCGTAAGTGGTGCATATTTTCCGTTCGATTACATTCCGAAGGCAACG 540
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CGCGATACAGCGAAGCGTCAGGAAAAGGGTGTTGTGCAGGGTGTGCAGCAGCAGGGAGCA 600
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      ACACAAAAGCTCGGGAGAATACAAGAAGAAAAAGCAACAAAAAAACTTGCCTCTGTGTGT 660
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GGTGCAGTGCGTCGTGTTTTCGGTGCGTATGTGTGTGTGTGCGTGTGTTTGTACACAGTG 720
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CGTAAGTGCGTACGAGTGTACCTATTTTCGTATGCGTGCGTGAAGAGCCTCCCCTCTCCG 780
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTCTAGCTACTCGAGCTCCTCGGAAACGTGTTTTTTCGTGAAAATGCGCTAGAAGTTTCC 840
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CGTACTTCTTGTTTCTTGTGGGGAAAAGTGTGTCACAAGCCACACGAAAGCAAAGATATC 900
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTGTTTTTCTGACGCGCGCGCGTGTATGTGTGTGTGAGAGAGAGAAAGATAATTATTGAC 960
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      AAAAGCGCTTACATTACCGAAGCCTGTGTTGAAG 994
consensus_5805#1      ----------------------------------