cluster # 5810

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Anopheles gambiae
cluster # 5810 cluster # 5810 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5810#0 length = 851 sequences # 3

consensus_5810#1 length = 443 sequences # 1

consensusID : consensus_5810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 851
fasta sequence

                              [CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGATTATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATCGCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGTGCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGTGTGTTTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAAT]

[+] EMBL BM610553             [CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGATTATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATCGCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGTGCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTT                                                                                                                                                                                       ]
[+] EMBL BM623732             [                                                                                                                                                                                                      ACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGT                                                                                                                                         ]
[+] EMBL BM611123             [                                                                                                                                                                                                                                                                           ccgACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGTGTGTTTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAAT]




>consensus_5810#0
CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGAT
TATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATC
GCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGT
GCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCT
GCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAAT
TCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGA
AACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATAC
ACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAA
AACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTG
TAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTT
TTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTAC
AAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGTGTGTTT
CTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCC
ATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTATG
ACTCTGAAAAT

consensusID : consensus_5810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAATTCTATACATTAGACAAGCGCAACACGTACCATTCGCAGAGAGGGTTTTTTTCTGTAGTGAGCCAATACGAAGTGCATAGGGGCTGCAATGATCTCACACACACACACATACACGAGCAGCACTTCCATACATGCACTAGGGAAACAATCAGTTTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAAGCGAGCACTTACAGAATAAGTAAGTTGTGGTGCAACGGTGTGGCACTGTGATGTGCTAAAGAGGAAANAGCTTACTGNGGCAATGGAGCATGTAAGGAAGNAGGC]

[+] EMBL BX468236             [AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAATTCTATACATTAGACAAGCGCAACACGTACCATTCGCAGAGAGGGTTTTTTTCTGTAGTGAGCCAATACGAAGTGCATAGGGGCTGCAATGATCTCACACACACACACATACACGAGCAGCACTTCCATACATGCACTAGGGAAACAATCAGTTTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAAGCGAGCACTTACAGAATAAGTAAGTTGTGGTGCAACGGTGTGGCACTGTGATGTGCTAAAGAGGAAANAGCTTACTGNGGCAATGGAGCATGTAAGGAAGNAGGC]




>consensus_5810#1
AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGAAGA
AAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACACACAA
ACAATTCACCTAAACTATGACTCTGAAAATTCTATACATTAGACAAGCGCAACACGTACC
ATTCGCAGAGAGGGTTTTTTTCTGTAGTGAGCCAATACGAAGTGCATAGGGGCTGCAATG
ATCTCACACACACACACATACACGAGCAGCACTTCCATACATGCACTAGGGAAACAATCA
GTTTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAAGCGAGCACTTACAGAATAAGTA
AGTTGTGGTGCAACGGTGTGGCACTGTGATGTGCTAAAGAGGAAANAGCTTACTGNGGCA
ATGGAGCATGTAAGGAAGNAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5810#0      CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGAT 60
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      TATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATC 120
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      GCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGT 180
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      GCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCT 240
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      GCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAAT 300
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      TCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGA 360
consensus_5810#1      ---AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGA 57
                          **  **   *    *  *  * **    **   ******    **  * * * ***

consensus_5810#0      AACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATAC 420
consensus_5810#1      AGAAAGAGAGTAAAC-TTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACAC 116
                      *  **** ** **** *** **  * ***    ***   **       *** * * * **

consensus_5810#0      ACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAA 480
consensus_5810#1      ACAAACAATTC--ACCTAAACTATGAC--TCTGAAAATTCTATACATTAGACAAGCGCAA 172
                      *** *** *    *   ***  * ***    ***** *    ** * ** *  *  ****

consensus_5810#0      AACAAAC-ATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGT 539
consensus_5810#1      CACGTACCATTCGCAGAGAGGGTTTTTTTCTGTA-GTGAGCCAATACGAAGTGCATAGGG 231
                       **  ** ** * *    *      * ***** * **  *    ***  *    *** * 

consensus_5810#0      GTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTT 599
consensus_5810#1      GC--TGCAATGA-TCTCACACACACACACAT-ACACGAGCAGCACTTCCATACATG---- 283
                      *   *** **** * **    *      *** *  ******   **       ***    

consensus_5810#0      TTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTA 659
consensus_5810#1      -CACTAGGGAAACAATCAGT-TTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAA--G 339
                         *  *  *   *** * *  ** *   *  **       ******         *   

consensus_5810#0      CAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAAT-TGCAATTGTGTGTGTGT 718
consensus_5810#1      CGAGCACTTACAGAATAAGTA---AGTTGTG-GTGCAACGGTGTGGCACTGTG-ATGTGC 394
                      * * ** **    **  **     ******   ** *    * **  * ****  **** 

consensus_5810#0      TTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCT 778
consensus_5810#1      TAAAGAGGAAANAGCTTACTGNGG--CAATGGAGCATGTAAGGAAGNAGGC--------- 443
                      *    *    *    **  **      ** *    *   *** ***   *          

consensus_5810#0      CCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTA 838
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      TGACTCTGAAAAT 851
consensus_5810#1      -------------